Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc9m03
         (682 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1734.01c ||SPBC337.17c|RNA-binding protein|Schizosaccharomyc...    28   1.1  
SPAC25H1.07 |||DUF1620 family protein|Schizosaccharomyces pombe|...    27   2.5  
SPCC63.06 |||human WDR89 family WD repeat protein|Schizosaccharo...    27   3.3  
SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyce...    25   7.7  
SPAC3F10.02c |trk1|sptrk|potassium ion transporter Trk1|Schizosa...    25   7.7  

>SPBC1734.01c ||SPBC337.17c|RNA-binding protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 682

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 16/39 (41%), Positives = 22/39 (56%)
 Frame = +1

Query: 397 DIDNIKLSHMQLARLLCYTAVVESRNSKPWKAIFNNDTC 513
           + D +KL   QL RL  Y AVVE  + +  K I+  +TC
Sbjct: 280 EFDMVKLRQYQLERLRYYYAVVECDSVRTAKVIY--ETC 316


>SPAC25H1.07 |||DUF1620 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 885

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = +1

Query: 523 DSFFNYIMNILNMIKTNQGSLAHNLSVVYHIENIQMNLQNKL 648
           D+F  YI+N  +    +Q S        Y+++NI  NL N++
Sbjct: 494 DAFSFYILNASDGSVISQKSRDFKADEFYYVDNISKNLPNQI 535


>SPCC63.06 |||human WDR89 family WD repeat
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 331

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 22/61 (36%), Positives = 30/61 (49%)
 Frame = +3

Query: 63  LFLNDNVNYATNKLFSKDQANGELQKLSAMLLNYKKSNKNVPNIKFDLKNFVVYAGKHGQ 242
           L   D  N+ T K    D + GEL+K    L   + S +    I FD+KN V Y+G  G+
Sbjct: 268 LAFGDFSNHET-KFVLVDTSTGELKKEPTKL--ERASEEICRAISFDVKNDVYYSG--GE 322

Query: 243 D 245
           D
Sbjct: 323 D 323


>SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1242

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 16/41 (39%), Positives = 18/41 (43%)
 Frame = -2

Query: 213  NFLGRI*YLARFCWTFCNLTTSPTVFVTRR*LDLC*TVYWW 91
            NF  R+  L  FCW    L T   VFV    L L   +Y W
Sbjct: 956  NFYKRLIALLLFCWICSTLVTVLLVFVP---LSLGRAIYAW 993


>SPAC3F10.02c |trk1|sptrk|potassium ion transporter
           Trk1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 841

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 6/15 (40%), Positives = 14/15 (93%)
 Frame = -3

Query: 203 VEFNIWHVFVGLFVI 159
           + +++W++F+GLF+I
Sbjct: 715 LSYDLWYIFLGLFII 729


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,659,302
Number of Sequences: 5004
Number of extensions: 51443
Number of successful extensions: 137
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)