Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc9m03
         (682 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0928 + 33085403-33089224                                         29   2.6  
04_04_1553 - 34363848-34366058,34369087-34370451                       28   6.0  
04_03_0190 + 12448027-12450825                                         28   6.0  
02_05_0551 + 29907768-29907909,29907995-29909280                       28   6.0  

>01_06_0928 + 33085403-33089224
          Length = 1273

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 14/36 (38%), Positives = 23/36 (63%)
 Frame = +1

Query: 544 MNILNMIKTNQGSLAHNLSVVYHIENIQMNLQNKLK 651
           +  LN+IKT    L  +L  +YH++ +Q+N  NK+K
Sbjct: 583 LRYLNIIKTFISELPRSLCTLYHLQLLQLN--NKVK 616


>04_04_1553 - 34363848-34366058,34369087-34370451
          Length = 1191

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 17/48 (35%), Positives = 27/48 (56%)
 Frame = +3

Query: 51  INELLFLNDNVNYATNKLFSKDQANGELQKLSAMLLNYKKSNKNVPNI 194
           I EL +L+   N  +  L   D+A G L KL+ + L+Y   N N+P++
Sbjct: 686 IPELRWLSLQENQLSGSL---DKALGNLSKLTLIDLSYNMFNGNIPDV 730


>04_03_0190 + 12448027-12450825
          Length = 932

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 10/35 (28%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = +1

Query: 460 VESRNSKPWKAIFNNDTCVL-TDSFFNYIMNILNM 561
           +  +N+  WK ++NN  C    D   N++ ++LN+
Sbjct: 391 LREKNNSEWKRVYNNLLCSFDNDPGLNHLKHVLNL 425


>02_05_0551 + 29907768-29907909,29907995-29909280
          Length = 475

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = -1

Query: 403 QCR*CLAPDFHC-RFPVACSVRSSSYSTIDCA 311
           QC+ C +P  +  R P+    RSSSYS + CA
Sbjct: 169 QCKPCPSPPCYSQRDPLFDPTRSSSYSAVPCA 200


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,844,516
Number of Sequences: 37544
Number of extensions: 287780
Number of successful extensions: 620
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 606
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 620
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1721314888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)