Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc9m03
         (682 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ303468-1|ABC18327.1| 1115|Anopheles gambiae putative methopren...    26   1.3  
AB090813-2|BAC57902.1| 1099|Anopheles gambiae reverse transcript...    23   6.7  
AJ438610-11|CAD27483.1|  765|Anopheles gambiae hypothetical prot...    23   8.9  
AF291654-1|AAG00600.1| 1340|Anopheles gambiae thioester-containi...    23   8.9  

>DQ303468-1|ABC18327.1| 1115|Anopheles gambiae putative
           methoprene-tolerant protein protein.
          Length = 1115

 Score = 25.8 bits (54), Expect = 1.3
 Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
 Frame = +3

Query: 9   SVNMRKYALLQKMIINELLFLNDNVNYATNKLFS--KDQANGELQKLSAMLLNYKKSNKN 182
           S + R Y +  + + N   F N N   A N+     +D+ NG +Q+LSAM+ +  +S + 
Sbjct: 200 SASPRCYPMPPEHMYNMFNF-NRNGREARNRAEKNRRDKLNGSIQELSAMVPHVAESPRR 258

Query: 183 V 185
           V
Sbjct: 259 V 259


>AB090813-2|BAC57902.1| 1099|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1099

 Score = 23.4 bits (48), Expect = 6.7
 Identities = 7/24 (29%), Positives = 12/24 (50%)
 Frame = +2

Query: 374 KIWCQTSPTLITLNCRTCNWRACY 445
           +IWC  +P L+        + +CY
Sbjct: 69  RIWCSNTPGLVAAEIGGTTFLSCY 92


>AJ438610-11|CAD27483.1|  765|Anopheles gambiae hypothetical protein
           protein.
          Length = 765

 Score = 23.0 bits (47), Expect = 8.9
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = -1

Query: 376 FHCRFPVACSVRSSSYSTIDCAIQTSLLSQVVHSFLRR 263
           F C   ++   R++  + +D  I+ SLL + +  FLRR
Sbjct: 83  FICTPVLSRQRRNARTNNVDLDIEVSLLCEELFLFLRR 120


>AF291654-1|AAG00600.1| 1340|Anopheles gambiae thioester-containing
            protein I protein.
          Length = 1340

 Score = 23.0 bits (47), Expect = 8.9
 Identities = 10/34 (29%), Positives = 18/34 (52%)
 Frame = -2

Query: 312  RFKQVYYRRLYIVFYVVKLNYIDLVRVFQHKRQN 211
            RFK    R  Y+V Y      ++ ++V++  +QN
Sbjct: 1291 RFKVALKRPAYVVVYDYYNTNLNAIKVYEVDKQN 1324


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 667,355
Number of Sequences: 2352
Number of extensions: 13266
Number of successful extensions: 17
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 68577420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)