Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc9m03
         (682 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024882-15|AAF60936.1|  688|Caenorhabditis elegans Hypothetical...    32   0.44 
AL022289-2|CAA18374.1|  478|Caenorhabditis elegans Hypothetical ...    29   2.3  
Z83219-2|CAB05695.1|  377|Caenorhabditis elegans Hypothetical pr...    28   5.4  
U29535-18|AAV28362.1|  140|Caenorhabditis elegans Hypothetical p...    28   7.1  
U29535-17|AAK31454.1|  295|Caenorhabditis elegans Hypothetical p...    28   7.1  
AF067217-2|AAF99977.1| 1887|Caenorhabditis elegans Heavy chain, ...    28   7.1  
U40411-2|AAR25660.2|  413|Caenorhabditis elegans Hypothetical pr...    27   9.4  

>AC024882-15|AAF60936.1|  688|Caenorhabditis elegans Hypothetical
           protein Y9C9A.13 protein.
          Length = 688

 Score = 31.9 bits (69), Expect = 0.44
 Identities = 20/66 (30%), Positives = 35/66 (53%)
 Frame = +3

Query: 18  MRKYALLQKMIINELLFLNDNVNYATNKLFSKDQANGELQKLSAMLLNYKKSNKNVPNIK 197
           ++K+  L+K+++ E L  ND V+      F+   +N +        LNY  S KN+ ++ 
Sbjct: 267 LQKHEKLKKIVVAETLLENDEVDGVEIMNFATFDSNKKT-------LNYMTSKKNLDSVI 319

Query: 198 FDLKNF 215
           F L+NF
Sbjct: 320 FLLRNF 325


>AL022289-2|CAA18374.1|  478|Caenorhabditis elegans Hypothetical
           protein ZK1225.2 protein.
          Length = 478

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 17/78 (21%), Positives = 35/78 (44%), Gaps = 3/78 (3%)
 Frame = +3

Query: 9   SVNMRKYALLQKMIIN---ELLFLNDNVNYATNKLFSKDQANGELQKLSAMLLNYKKSNK 179
           ++N   Y  + +++       L L  N +  T  ++  D+    L   + + L  K+  +
Sbjct: 203 NINSAHYRCMMELVTRPGWSYLVLLQNFDLITKSVYEMDRIFELLDGANDVNLASKRPGR 262

Query: 180 NVPNIKFDLKNFVVYAGK 233
             PN+K+DLK   ++  K
Sbjct: 263 RKPNLKWDLKTLKLFRNK 280


>Z83219-2|CAB05695.1|  377|Caenorhabditis elegans Hypothetical
           protein C31C9.3 protein.
          Length = 377

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = +3

Query: 507 HMRFDRFFFQLYHEYFEYD*NQSRIPGSQSVGGIP 611
           +  F+R+F++ YH   + D + SR P + S+  +P
Sbjct: 44  YREFERWFYRFYHGNEDLDYDMSREPKTASLSELP 78


>U29535-18|AAV28362.1|  140|Caenorhabditis elegans Hypothetical
           protein C25H3.10b protein.
          Length = 140

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 12/30 (40%), Positives = 21/30 (70%)
 Frame = +1

Query: 214 LSFMLENTDKIDIIQFDDVKNYVQPAIVNL 303
           +SF L N+++I+ I  DD+  Y++ A V+L
Sbjct: 60  ISFTLANSNEINTINHDDMDKYLRGAKVDL 89


>U29535-17|AAK31454.1|  295|Caenorhabditis elegans Hypothetical
           protein C25H3.10a protein.
          Length = 295

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 12/30 (40%), Positives = 21/30 (70%)
 Frame = +1

Query: 214 LSFMLENTDKIDIIQFDDVKNYVQPAIVNL 303
           +SF L N+++I+ I  DD+  Y++ A V+L
Sbjct: 60  ISFTLANSNEINTINHDDMDKYLRGAKVDL 89


>AF067217-2|AAF99977.1| 1887|Caenorhabditis elegans Heavy chain,
           unconventional myosinprotein 7 protein.
          Length = 1887

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = +3

Query: 72  NDNVNYATNKLFSKD 116
           NDN+ Y TNK+F +D
Sbjct: 930 NDNIQYGTNKIFMRD 944


>U40411-2|AAR25660.2|  413|Caenorhabditis elegans Hypothetical
           protein B0403.5 protein.
          Length = 413

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +2

Query: 329 ITTRPN*TRYWKTAMKIWCQTSPTLIT 409
           +TTRP  T  W+T  +I   T PT  T
Sbjct: 365 LTTRPVTTTTWRTTRRITTTTKPTTTT 391


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,801,498
Number of Sequences: 27780
Number of extensions: 296092
Number of successful extensions: 806
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 794
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 806
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1550199966
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)