Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc9l24
         (492 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.03 ||SPAC644.01c|SBDS family ribosome maturation protein...   114   6e-27
SPCC1739.14 |npp106||nucleoporin Npp106|Schizosaccharomyces pomb...    29   0.50 
SPAC144.06 |apl5||AP-3 adaptor complex subunit Apl5 |Schizosacch...    29   0.50 
SPAC1A6.01c ||SPAC23C4.20c|human thyroid receptor interacting pr...    26   2.7  
SPBC1734.02c |cdc27|SPBC337.18c|DNA polymerase delta subunit Cdc...    26   3.5  
SPBC31F10.16 |||ChAPs family protein|Schizosaccharomyces pombe|c...    25   8.2  
SPBC577.04 |||human THOC5 homolog|Schizosaccharomyces pombe|chr ...    25   8.2  

>SPAC4F8.03 ||SPAC644.01c|SBDS family ribosome maturation
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 246

 Score =  114 bits (275), Expect = 6e-27
 Identities = 55/126 (43%), Positives = 87/126 (69%), Gaps = 2/126 (1%)
 Frame = -1

Query: 480 QIDSLFKDIATTVADKCVNPETKRPYPVSIIEKAIKDVHFSVNVNKSAKQQALDVIQIL- 304
           Q+ S ++DI + V   C++P +KRPYP SIIEKA+ D  FSV+ +K+AK QAL+ I+ L 
Sbjct: 103 QMSSTYRDIVSHVTAMCMDPNSKRPYPASIIEKALSDCGFSVSTSKTAKSQALEAIKKLQ 162

Query: 303 -KNEIPIERAQMRVRILLTGKDARKTKDKVVKLATTVEDENWESGTANIVCLIDPGNFRS 127
            KNEIPI RA+MR+RI++  K  +  ++++  LA  +E+EN +      + L+ PGN++ 
Sbjct: 163 EKNEIPIVRARMRIRIVVDVKQGKALRERLRSLADEIEEENIDD-EYECIALVIPGNYKL 221

Query: 126 LDEMIR 109
           +DE++R
Sbjct: 222 IDELVR 227


>SPCC1739.14 |npp106||nucleoporin Npp106|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 933

 Score = 28.7 bits (61), Expect = 0.50
 Identities = 22/73 (30%), Positives = 30/73 (41%)
 Frame = -1

Query: 396 SIIEKAIKDVHFSVNVNKSAKQQALDVIQILKNEIPIERAQMRVRILLTGKDARKTKDKV 217
           SI  K  K++H S NV  S    AL    +   E      +   ++  T K A K   KV
Sbjct: 743 SIDSKESKNMHISSNVVASEAPDALAANLLAMYE---SNPKKSAKVSATNKKALKVLLKV 799

Query: 216 VKLATTVEDENWE 178
           VK+      E W+
Sbjct: 800 VKVQKLYGQEKWD 812


>SPAC144.06 |apl5||AP-3 adaptor complex subunit Apl5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 834

 Score = 28.7 bits (61), Expect = 0.50
 Identities = 12/44 (27%), Positives = 22/44 (50%)
 Frame = -1

Query: 444 VADKCVNPETKRPYPVSIIEKAIKDVHFSVNVNKSAKQQALDVI 313
           + D CV  +  RP+ V I  +AI D  +    + S  ++  D++
Sbjct: 432 IIDLCVRVKALRPFSVDIFSQAILDPSYVSTTDCSVSEKRTDIL 475


>SPAC1A6.01c ||SPAC23C4.20c|human thyroid receptor interacting
           protein homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 455

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = -1

Query: 426 NPETKRPYPVSIIEKAIKDVHFSVNVNKSAKQ 331
           N  + R   ++ IEKAI+ +  S N+NK+ ++
Sbjct: 162 NSSSNRIEGLADIEKAIRQIEISQNINKAERR 193


>SPBC1734.02c |cdc27|SPBC337.18c|DNA polymerase delta subunit
           Cdc27|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 372

 Score = 25.8 bits (54), Expect = 3.5
 Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 5/75 (6%)
 Frame = -1

Query: 366 HFSVNVNKSAKQQALDVIQILKNEIP--IERAQMRVRILLTGKDARK---TKDKVVKLAT 202
           +F + +   AK  A D  Q +   +     R + +V+   T KD      TK++ V  + 
Sbjct: 266 NFQLEIGTEAKSAAPDEPQEIIKSVSGGKRRGKRKVKKYATTKDEEGFLVTKEEEVWESF 325

Query: 201 TVEDENWESGTANIV 157
           + EDEN  +GT+N+V
Sbjct: 326 S-EDENISTGTSNVV 339


>SPBC31F10.16 |||ChAPs family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 679

 Score = 24.6 bits (51), Expect = 8.2
 Identities = 15/44 (34%), Positives = 21/44 (47%)
 Frame = +2

Query: 335 FALLFTLTEKWTSLIAFSIIETGYGRFVSGLTHLSATVVAISLN 466
           F  LFT  E  T  +  +  + G   FVSG+   S+  +A  LN
Sbjct: 63  FTKLFTPIETLTFYVLLTSSKVGTYHFVSGVDASSSASLAAYLN 106


>SPBC577.04 |||human THOC5 homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 200

 Score = 24.6 bits (51), Expect = 8.2
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = +3

Query: 78  TAWPLILNIQFLSFHPNF*SCQD 146
           TA PL+   +FL  HP F S  D
Sbjct: 109 TALPLVSKEEFLKEHPEFKSSND 131


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,785,532
Number of Sequences: 5004
Number of extensions: 32560
Number of successful extensions: 109
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 192109570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)