Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc9l24
(492 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0052 + 361505-361969,362270-362348,362816-362880,363069-36... 64 6e-11
12_02_0709 - 22359705-22360292,22360396-22360560,22360650-223611... 29 1.5
01_06_0929 + 33091184-33091510,33092503-33092646,33093054-33097001 29 2.0
03_05_0196 + 21849370-21850278,21850424-21851050 29 2.7
12_02_0761 - 22901121-22901917,22902111-22902707,22904282-229043... 27 6.2
05_07_0364 - 29611149-29611211,29611441-29611623,29611796-296118... 27 8.2
05_04_0020 - 17199627-17199947,17200129-17200203,17200301-172003... 27 8.2
01_06_0928 + 33085403-33089224 27 8.2
>08_01_0052 +
361505-361969,362270-362348,362816-362880,363069-363236,
363731-364171
Length = 405
Score = 64.1 bits (149), Expect = 6e-11
Identities = 26/52 (50%), Positives = 41/52 (78%)
Frame = -1
Query: 483 SQIDSLFKDIATTVADKCVNPETKRPYPVSIIEKAIKDVHFSVNVNKSAKQQ 328
+Q+ S F +IAT V DK +NPET+RPY +++IE+ + DVHF+V+ N ++K+Q
Sbjct: 104 AQLSSQFHEIATIVMDKTINPETRRPYTITMIERLMHDVHFAVDPNLTSKEQ 155
Score = 38.3 bits (85), Expect = 0.003
Identities = 22/75 (29%), Positives = 36/75 (48%)
Frame = -1
Query: 327 ALDVIQILKNEIPIERAQMRVRILLTGKDARKTKDKVVKLATTVEDENWESGTANIVCLI 148
AL VI+ L PI+RA +RVR +K+ + V ++ ++VC I
Sbjct: 204 ALKVIKKLTEHFPIKRAPLRVRFTAPKSKFASLTEKLEEWNANVISKDESGSQPSVVCEI 263
Query: 147 DPGNFRSLDEMIRIV 103
+P RS +E ++ V
Sbjct: 264 EPSILRSCEERLKDV 278
>12_02_0709 -
22359705-22360292,22360396-22360560,22360650-22361157,
22361159-22361577,22362261-22362722,22362853-22364415
Length = 1234
Score = 29.5 bits (63), Expect = 1.5
Identities = 24/99 (24%), Positives = 44/99 (44%), Gaps = 4/99 (4%)
Frame = -1
Query: 375 KDVHFSVNVNKSAKQQALDVIQILKNEIPIERAQMRVRIL----LTGKDARKTKDKVVKL 208
K +H + +Q ++ + + I ++ +R+L LT KDA K V L
Sbjct: 387 KKLHMQAINIFTQQQHPMEALSTTSSNIDTTYSETNIRLLVDIFLTNKDASTRKMAVGIL 446
Query: 207 ATTVEDENWESGTANIVCLIDPGNFRSLDEMIRIVYLVL 91
A + D+N + AN + F++ D ++R + VL
Sbjct: 447 AILLSDQNKSNANANATII-----FKASDTVVRDLKTVL 480
>01_06_0929 + 33091184-33091510,33092503-33092646,33093054-33097001
Length = 1472
Score = 29.1 bits (62), Expect = 2.0
Identities = 15/48 (31%), Positives = 24/48 (50%)
Frame = +2
Query: 341 LLFTLTEKWTSLIAFSIIETGYGRFVSGLTHLSATVVAISLNKESICE 484
LL L E T F + + G + + HLS V ++ +K+SIC+
Sbjct: 702 LLHDLAESLTKEDCFRLEDDGVKEIPTTVRHLSVRVESMKFHKQSICK 749
>03_05_0196 + 21849370-21850278,21850424-21851050
Length = 511
Score = 28.7 bits (61), Expect = 2.7
Identities = 20/63 (31%), Positives = 32/63 (50%)
Frame = -1
Query: 393 IIEKAIKDVHFSVNVNKSAKQQALDVIQILKNEIPIERAQMRVRILLTGKDARKTKDKVV 214
II I D+ FS S+ + +++KN + +AQ VR G+D + T+D V
Sbjct: 297 IISTVIFDI-FSAGSETSSTTLDWTMSELMKNPRILRKAQSEVRETFKGQD-KLTEDDVA 354
Query: 213 KLA 205
KL+
Sbjct: 355 KLS 357
>12_02_0761 -
22901121-22901917,22902111-22902707,22904282-22904358,
22906543-22907135,22907552-22908118,22908431-22908958,
22909115-22909432,22910622-22910656,22910986-22911301
Length = 1275
Score = 27.5 bits (58), Expect = 6.2
Identities = 17/66 (25%), Positives = 29/66 (43%), Gaps = 1/66 (1%)
Frame = -1
Query: 318 VIQILKNEIPIERAQMRVRIL-LTGKDARKTKDKVVKLATTVEDENWESGTANIVCLIDP 142
++ + EI I +++ +L L G D V L+ T E+WE+ + +D
Sbjct: 223 LVHDIMREIAISKSKEENLVLRLEGGRRLHNHDTVRHLSITNSSEDWETDVGELKTTVDM 282
Query: 141 GNFRSL 124
RSL
Sbjct: 283 SRIRSL 288
Score = 27.5 bits (58), Expect = 6.2
Identities = 21/78 (26%), Positives = 33/78 (42%), Gaps = 3/78 (3%)
Frame = -1
Query: 348 NKSAKQQALDVIQI--LKNEIPIERAQMRVRIL-LTGKDARKTKDKVVKLATTVEDENWE 178
N + + D QI + EI I +++ +L L G D V L+ T E+WE
Sbjct: 860 NSTYSSRGADSCQIHDIMREIAILKSKEENLVLRLEGGRRLHNHDTVRHLSITNSSEDWE 919
Query: 177 SGTANIVCLIDPGNFRSL 124
+ + +D RSL
Sbjct: 920 TDVGELKTTVDMSRIRSL 937
>05_07_0364 -
29611149-29611211,29611441-29611623,29611796-29611853,
29612150-29612207,29612504-29612561,29612859-29612916,
29613214-29613271,29613568-29613625,29613923-29613980,
29614277-29614334,29614631-29614688,29614983-29615040,
29615337-29615394,29615691-29615748,29616045-29616102,
29616400-29616457,29616755-29616812,29617109-29617166,
29617463-29617520,29617817-29617874,29618171-29618228,
29618525-29618582,29618878-29618935,29619233-29619290,
29619942-29619999,29620297-29620376,29620649-29620706,
29621001-29621058,29621353-29621410,29621707-29621764,
29622415-29622472,29622767-29622824,29623121-29623164,
29623475-29623532,29623829-29623886,29624537-29624594,
29624889-29624946,29625243-29625300,29625597-29625654,
29626305-29626400,29626697-29626792,29627797-29627892,
29628188-29628283,29629996-29630053,29630350-29630407,
29630704-29630799,29631096-29631191,29632196-29632253,
29632549-29632644,29633648-29633743,29634040-29634042
Length = 1114
Score = 27.1 bits (57), Expect = 8.2
Identities = 7/20 (35%), Positives = 16/20 (80%)
Frame = +3
Query: 69 RTSTAWPLILNIQFLSFHPN 128
+T+T+WP++ +++ +FH N
Sbjct: 308 KTATSWPMLWTLRYSTFHRN 327
>05_04_0020 -
17199627-17199947,17200129-17200203,17200301-17200384,
17200483-17200562,17201354-17201508,17202602-17203215
Length = 442
Score = 27.1 bits (57), Expect = 8.2
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = -1
Query: 363 FSVNVNKSAKQQALDVIQILKNEIPIERAQMRVRILLTG 247
FSV S +QQ L Q + ++P+ + +R+L+TG
Sbjct: 93 FSVEPAVSRRQQQLPARQFVGGKVPLGLKRKGLRVLVTG 131
>01_06_0928 + 33085403-33089224
Length = 1273
Score = 27.1 bits (57), Expect = 8.2
Identities = 15/48 (31%), Positives = 25/48 (52%)
Frame = +2
Query: 341 LLFTLTEKWTSLIAFSIIETGYGRFVSGLTHLSATVVAISLNKESICE 484
LL L E + F + + S + HLS V +++L+K+SIC+
Sbjct: 482 LLHDLAEALSKEDCFRLDDDKVKEMPSTVRHLSVCVQSMTLHKQSICK 529
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,553,738
Number of Sequences: 37544
Number of extensions: 176263
Number of successful extensions: 423
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 414
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 423
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1023611560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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