Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc9l20
         (696 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0295 + 2217496-2218092,2218774-2218876,2219140-2219249,221...    32   0.50 
02_01_0405 - 2952434-2955583                                           31   1.2  
01_01_0453 - 3361460-3361549,3361660-3361846,3362038-3362139,336...    28   6.2  
08_02_0294 - 15432424-15432669,15433007-15433099,15433168-154332...    28   8.1  

>11_01_0295 +
           2217496-2218092,2218774-2218876,2219140-2219249,
           2219328-2219399,2219653-2219814,2220300-2220510,
           2220613-2220948,2221050-2221162
          Length = 567

 Score = 31.9 bits (69), Expect = 0.50
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = -2

Query: 611 PADLHDAVPGYSGAHASPPSTETVAAGRKNNCA 513
           PADL D + G  G+H  P ST+    G +   A
Sbjct: 121 PADLKDLIAGLYGSHPQPSSTDAAEVGTQEGSA 153


>02_01_0405 - 2952434-2955583
          Length = 1049

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 24/80 (30%), Positives = 35/80 (43%)
 Frame = +1

Query: 412 CLEHNYTREIVRLMTTLPVPSNRNTLSQFCTERHAQLFLRPAATVSVEGGDACAPEYPGT 591
           C +H+    I  L   L +  N  +L+  CTE+     LR    +S +GG A A    GT
Sbjct: 8   CKKHSNKFPIPVLALALVLLINLASLTSSCTEQDRSSLLRFLRELSQDGGLA-ASWQDGT 66

Query: 592 ASCKSAGVCSSAGQQMDGVT 651
             CK  G+  S    +  V+
Sbjct: 67  DCCKWDGITCSQDSTVTDVS 86


>01_01_0453 -
           3361460-3361549,3361660-3361846,3362038-3362139,
           3362239-3362306,3362976-3363175,3363253-3363595,
           3363837-3363893,3364011-3364727,3364805-3365007,
           3365171-3365297
          Length = 697

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +1

Query: 415 LEHNYTREIVRLMTTLPVPSNRNTLS 492
           L+H  TR+++ L    PV +N+N LS
Sbjct: 147 LDHRQTRDLISLFLPAPVRANQNKLS 172


>08_02_0294 -
           15432424-15432669,15433007-15433099,15433168-15433251,
           15434311-15434446,15434601-15434746,15435017-15435242,
           15435885-15435967,15436867-15437061,15437148-15437246,
           15438237-15438350,15438424-15438511,15438790-15438995,
           15439306-15439358,15440473-15440776,15441278-15441366,
           15441584-15441958,15442382-15442446,15442945-15442970,
           15444007-15444225
          Length = 948

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
 Frame = +1

Query: 526 LRPAATVSVEGGDACA--PEYPGTASCKSAGVCSSAGQQMDGVTNRII 663
           L+PAA VSVE  +A A  P+    +  K  G C    Q++  V + I+
Sbjct: 99  LKPAAAVSVEQAEASAHLPKGDMWSVHKFGGTCMGTSQRIQNVADIIL 146


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,788,036
Number of Sequences: 37544
Number of extensions: 384813
Number of successful extensions: 1129
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1096
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1129
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1780264028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)