Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc9l03
         (328 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC285.09c |cgs2|pde1|cAMP-specific phosphodiesterase Cgs2|Schi...    25   2.9  
SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10 |...    24   5.1  
SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyce...    24   5.1  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    24   5.1  
SPCC11E10.05c |ynd1||nucleoside diphosphatase |Schizosaccharomyc...    23   8.8  

>SPCC285.09c |cgs2|pde1|cAMP-specific phosphodiesterase
           Cgs2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 346

 Score = 25.0 bits (52), Expect = 2.9
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = -3

Query: 113 SNVFVFRFNLSEGYVFFCFQDGRPRRALQSTRYVH 9
           S+ F+FR NLS+ Y F  F D  P         +H
Sbjct: 203 SSAFLFRNNLSDRY-FLAFGDVEPDMVASEPLNIH 236


>SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 791

 Score = 24.2 bits (50), Expect = 5.1
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = -1

Query: 283 LSTKVK*IHDICNKIIKYFAISKLQCVTLNIIQ 185
           L +K++  H  CNK+IK F  SK Q     II+
Sbjct: 741 LRSKLEAYHINCNKVIKEF--SKRQTARYKIIE 771


>SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1210

 Score = 24.2 bits (50), Expect = 5.1
 Identities = 14/46 (30%), Positives = 22/46 (47%)
 Frame = +1

Query: 97  KTKTLEGEVLSKIPCYFFCISQLVIFKYNFE*YSRSHIVIY*LQNT 234
           KTK+ +  V++  P        L   K+NF  Y    +V Y ++NT
Sbjct: 786 KTKSFDCIVIASQPKLSLAFQNLTSGKFNFAEYETGELV-YVIENT 830


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 24.2 bits (50), Expect = 5.1
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +2

Query: 140  VISFVFHNWLFSNTILNN 193
            ++S V  NWLF  TIL N
Sbjct: 1545 LLSVVKDNWLFFQTILTN 1562


>SPCC11E10.05c |ynd1||nucleoside diphosphatase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 572

 Score = 23.4 bits (48), Expect = 8.8
 Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
 Frame = -1

Query: 118 LLPTFSFFVLTYLKVMFF-FVFKTAGLDARCNQR 20
           L P   FF+L+++  +FF F     G D +  QR
Sbjct: 466 LFPNKLFFILSFIFCLFFLFSLVLFGYDPKRRQR 499


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,218,488
Number of Sequences: 5004
Number of extensions: 22246
Number of successful extensions: 38
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 38
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 89857768
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)