Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc9l03
         (328 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0346 + 23335753-23335854,23336268-23336473,23336530-233367...    28   2.0  
11_06_0370 + 22768977-22769523,22769619-22770642,22770784-227711...    27   4.6  
11_01_0521 + 4083594-4083763,4083765-4083963,4084059-4084244,408...    26   6.1  
04_04_0642 - 26899426-26899767                                         26   6.1  

>03_05_0346 +
           23335753-23335854,23336268-23336473,23336530-23336705,
           23336832-23337064,23337546-23337963,23338045-23338262,
           23338905-23339168
          Length = 538

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 10/53 (18%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
 Frame = +2

Query: 14  HTALIATRVEACRLENKKKHNLQIS*NEKRKRWKEKCYLKYRVISFVFH-NWL 169
           H +L+  +  AC         + +  + K ++W  K Y++   + ++ H  W+
Sbjct: 236 HASLVIAKHYACAYFPHTSQTITLKWHGKNRKWHPKFYIRKDQVGYILHGRWI 288


>11_06_0370 +
           22768977-22769523,22769619-22770642,22770784-22771170,
           22771216-22771507
          Length = 749

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 11/36 (30%), Positives = 23/36 (63%)
 Frame = +1

Query: 82  DKLKRKTKTLEGEVLSKIPCYFFCISQLVIFKYNFE 189
           DK+K+     EG+ L +   +FF +++++ F+Y +E
Sbjct: 493 DKVKKIIYRHEGKELDEQCSFFFHVNEILHFRYYYE 528


>11_01_0521 +
           4083594-4083763,4083765-4083963,4084059-4084244,
           4085834-4086025,4086979-4087200,4089238-4089444,
           4089681-4090082,4090201-4090230,4090307-4090318
          Length = 539

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 15/31 (48%), Positives = 17/31 (54%)
 Frame = -1

Query: 121 LLLPTFSFFVLTYLKVMFFFVFKTAGLDARC 29
           +LL  F   VLT L V   FV K  GL+ RC
Sbjct: 502 ILLAIFLIVVLTMLIVWGSFVKKPKGLNDRC 532


>04_04_0642 - 26899426-26899767
          Length = 113

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +2

Query: 32  TRVEACRLENKKKHNLQIS*NEKRKRW 112
           +R   CR +NK + NL+ +  + RK W
Sbjct: 36  SRSHGCRSQNKDQRNLEKNLTKVRKEW 62


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,870,371
Number of Sequences: 37544
Number of extensions: 111006
Number of successful extensions: 175
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 175
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 435246480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)