Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc9l03
         (328 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z48009-10|CAA88082.1|  331|Caenorhabditis elegans Hypothetical p...    26   5.6  
AC006834-4|AAF40012.1|  392|Caenorhabditis elegans Hypothetical ...    26   5.6  
Z93388-12|CAB07661.2|  294|Caenorhabditis elegans Hypothetical p...    25   9.7  
Z27079-11|CAC42341.1|  115|Caenorhabditis elegans Hypothetical p...    25   9.7  
AF009907-1|AAB63300.1|  101|Caenorhabditis elegans paraquat-indu...    25   9.7  
AC024826-13|AAF60794.2|  305|Caenorhabditis elegans Serpentine r...    25   9.7  

>Z48009-10|CAA88082.1|  331|Caenorhabditis elegans Hypothetical
           protein AH6.14 protein.
          Length = 331

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -1

Query: 166 PIVKYKRNNTVF*ITLLLPTFSFFVLTYLKV 74
           P   YKR NT F +  +LP F+  +   LK+
Sbjct: 179 PKNSYKRYNTYFTVCTVLPLFNLGISILLKI 209


>AC006834-4|AAF40012.1|  392|Caenorhabditis elegans Hypothetical
           protein ZK973.8 protein.
          Length = 392

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -1

Query: 106 FSFFVLTYLKVMFFFVFKTAGLDARCNQRGMYIA 5
           F F +L   K   F +  T  L+  CN+ G+Y+A
Sbjct: 186 FRFNLLMNQKTHNFLLTTTTQLEFPCNKEGLYVA 219


>Z93388-12|CAB07661.2|  294|Caenorhabditis elegans Hypothetical
           protein T10C6.4 protein.
          Length = 294

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = -1

Query: 139 TVF*ITLLLPTFSFFVLTYLKVMFFFV 59
           TVF   +L  TFS F  T +   FFFV
Sbjct: 30  TVFGALILNETFSQFAATSITFFFFFV 56


>Z27079-11|CAC42341.1|  115|Caenorhabditis elegans Hypothetical
           protein T05G5.11 protein.
          Length = 115

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = -1

Query: 127 ITLLLPTFSFFVLTYLKVMFFFVF 56
           +T+LLP F+FF+++    + F VF
Sbjct: 47  LTILLPMFAFFIMSSRSCIQFPVF 70


>AF009907-1|AAB63300.1|  101|Caenorhabditis elegans
           paraquat-inducible protein protein.
          Length = 101

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = -1

Query: 127 ITLLLPTFSFFVLTYLKVMFFFVF 56
           +T+LLP F+FF+++    + F VF
Sbjct: 33  LTILLPMFAFFIMSSRSCIQFPVF 56


>AC024826-13|AAF60794.2|  305|Caenorhabditis elegans Serpentine
           receptor, class x protein12 protein.
          Length = 305

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +2

Query: 110 WKEKCYLKYRVISFVFHNWLFSNT 181
           W+E CY+ Y  +S+    W+F +T
Sbjct: 145 WRETCYVAYDPVSW---TWVFGDT 165


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,656,195
Number of Sequences: 27780
Number of extensions: 122977
Number of successful extensions: 322
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 320
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 322
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 398409266
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)