Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc9k24
         (280 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||...    26   0.86 
SPACUNK4.08 |||dipeptidyl aminopeptidase |Schizosaccharomyces po...    26   1.1  
SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog Rhp16|Schizo...    25   2.0  
SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces...    25   2.6  
SPBC2D10.07c |||mitochondrial inner membrane peptidase complex c...    24   3.5  
SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharo...    24   4.6  
SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces pombe...    23   6.1  
SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces pombe...    23   8.0  
SPAC20G4.07c |sts1|erg4|C-24|Schizosaccharomyces pombe|chr 1|||M...    23   8.0  
SPBP4H10.04 |ppb1||calcineurin catalytic subunit Ppb1|Schizosacc...    23   8.0  

>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
          1|||Manual
          Length = 3227

 Score = 26.2 bits (55), Expect = 0.86
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -3

Query: 86 RPPSRVVFLFHQAQNHKPTKPIGL 15
          +PP RV     QAQN + T  +GL
Sbjct: 14 QPPPRVAEFIRQAQNEEVTSDLGL 37


>SPACUNK4.08 |||dipeptidyl aminopeptidase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 793

 Score = 25.8 bits (54), Expect = 1.1
 Identities = 8/25 (32%), Positives = 16/25 (64%)
 Frame = -2

Query: 174 FPNNLHHTEHNAKLMSLFHRLHLWM 100
           FP++ H   ++   +S++HRL  W+
Sbjct: 750 FPDSAHSISYHNASLSIYHRLSEWI 774


>SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog
           Rhp16|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 963

 Score = 25.0 bits (52), Expect = 2.0
 Identities = 11/19 (57%), Positives = 16/19 (84%), Gaps = 1/19 (5%)
 Frame = +1

Query: 172 KKFKEPLPTN-KLVIKTKN 225
           K+F+EPL TN KL+I++ N
Sbjct: 156 KEFEEPLSTNKKLIIQSNN 174


>SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 879

 Score = 24.6 bits (51), Expect = 2.6
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +1

Query: 166 IWKKFKEPLPTNKLVIKTKNVQFLNVNKIRAKLQKKK 276
           +W+ F   L  N    +TK  + LN+N +R  +Q  K
Sbjct: 560 VWETFSSLLHANA---RTKKKELLNINFVRKYIQYAK 593


>SPBC2D10.07c |||mitochondrial inner membrane peptidase complex
           catalytic subunit|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 157

 Score = 24.2 bits (50), Expect = 3.5
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = -3

Query: 101 CKRLLRPPSRVVFLFHQAQNHKPTKPIG 18
           CKR++  P   +++   + N K T P+G
Sbjct: 79  CKRIIGMPGDTIYVDPTSSNKKITIPLG 106


>SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1369

 Score = 23.8 bits (49), Expect = 4.6
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = -1

Query: 280  FFFSFVIWLLFYLHLKTVHFLS*SPVCLWVMA 185
            F  S ++W   Y +L +VH LS  P  ++ +A
Sbjct: 984  FILSTIVWWGLYRNLPSVHSLS-LPFAVYALA 1014


>SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 969

 Score = 23.4 bits (48), Expect = 6.1
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -2

Query: 183 FKFFPNNLHHTEHNAKLMSL 124
           + FF NN+H+   N K +S+
Sbjct: 898 YSFFINNIHYEGENTKKISV 917


>SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 564

 Score = 23.0 bits (47), Expect = 8.0
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +2

Query: 14  IDLLAWLVCDFELDETRKRHEKEVGEDVYIHKCSL 118
           IDLL   +  + L +  +  E+E+ E+V+   CSL
Sbjct: 289 IDLLLRRISPYRLRDPTQGSEEEMMENVFDCLCSL 323


>SPAC20G4.07c |sts1|erg4|C-24|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 453

 Score = 23.0 bits (47), Expect = 8.0
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = -3

Query: 269 FCNLALILFTFKNCTFFVLITSLFVGNGSLNF 174
           F N+A + FT+ +CT ++      V N S  +
Sbjct: 280 FWNMAGVPFTYSHCTLYLFSHDPSVYNWSTQY 311


>SPBP4H10.04 |ppb1||calcineurin catalytic subunit
           Ppb1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 554

 Score = 23.0 bits (47), Expect = 8.0
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +2

Query: 149 SVWCRLFGKNLKSHYPQTNW*LR 217
           S+ C L+   LK  YP+T W LR
Sbjct: 155 SIECLLYLWALKIWYPKTLWLLR 177


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,229,138
Number of Sequences: 5004
Number of extensions: 23210
Number of successful extensions: 73
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 73
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 61566900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)