Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc9k24
(280 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0395 + 17266560-17266593,17266656-17267199,17267297-172677... 26 3.7
09_04_0310 + 16578679-16580936,16581027-16581294 26 3.7
11_06_0600 + 25401849-25402175 26 4.9
08_01_1072 + 10954080-10954851,10954956-10955027,10955108-109551... 26 4.9
03_02_0762 - 10968888-10969466,10972522-10974175,10974277-109743... 26 4.9
01_06_1559 + 38247463-38247499,38247711-38247747,38248181-382482... 26 4.9
03_06_0370 + 33431696-33432217,33432521-33432796,33433003-334331... 25 6.5
12_02_0284 - 16791153-16791212,16791392-16791925,16792266-167926... 25 8.6
11_04_0426 - 17573681-17574010,17574163-17574282,17574382-175747... 25 8.6
05_03_0214 + 10345898-10346728 25 8.6
>09_04_0395 +
17266560-17266593,17266656-17267199,17267297-17267766,
17267855-17267990,17268097-17268168,17268228-17268276,
17268292-17268360,17268609-17268680,17268769-17268786
Length = 487
Score = 26.2 bits (55), Expect = 3.7
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = +2
Query: 14 IDLLAWLVCDFELDETRKRHE 76
ID L WL C + D T R+E
Sbjct: 430 IDCLIWLACGKQSDRTNSRYE 450
>09_04_0310 + 16578679-16580936,16581027-16581294
Length = 841
Score = 26.2 bits (55), Expect = 3.7
Identities = 8/24 (33%), Positives = 16/24 (66%)
Frame = +1
Query: 133 QFCVMFSVVQIIWKKFKEPLPTNK 204
Q+ +MF V+++ W +F E + + K
Sbjct: 670 QYYIMFEVLEVSWARFSEEMDSAK 693
>11_06_0600 + 25401849-25402175
Length = 108
Score = 25.8 bits (54), Expect = 4.9
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = -3
Query: 257 ALILFTFKNCTFFVLITSLFVGNGSLN 177
A+++FT NC +TSL VG +N
Sbjct: 12 AVVVFTASNCGMCHAVTSLLVGELGVN 38
>08_01_1072 +
10954080-10954851,10954956-10955027,10955108-10955191,
10955285-10955353,10955814-10955916,10956033-10956107,
10956204-10956366,10956502-10956571,10956649-10956735,
10956795-10956836,10956904-10956969,10957201-10957275,
10960149-10960271,10960683-10960966
Length = 694
Score = 25.8 bits (54), Expect = 4.9
Identities = 17/45 (37%), Positives = 22/45 (48%)
Frame = -3
Query: 260 LALILFTFKNCTFFVLITSLFVGNGSLNFFQIICTTLNITQN*CH 126
LAL+LF C FV + +L SL+ FQ LN +Q H
Sbjct: 447 LALLLFAMARCGNFVTLWTLAKLASSLSSFQQPHGALNHSQTNVH 491
>03_02_0762 -
10968888-10969466,10972522-10974175,10974277-10974359,
10974435-10974533,10974620-10974706,10974782-10974838,
10974939-10975065,10975344-10975465,10975685-10975732,
10975867-10976268
Length = 1085
Score = 25.8 bits (54), Expect = 4.9
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +3
Query: 45 LSLMKQENDTRRRSEKTFTSISAACEIMTSILRYV 149
L L Q ND R+SEK + +A+ M S R++
Sbjct: 709 LMLSHQANDNHRKSEKGWPGPAASLTFMRSRNRFI 743
>01_06_1559 +
38247463-38247499,38247711-38247747,38248181-38248276,
38248671-38248788,38248844-38248878,38249173-38249452,
38249701-38249820,38250369-38250620
Length = 324
Score = 25.8 bits (54), Expect = 4.9
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = +1
Query: 136 FCVMFSVVQIIWKKFKEPLPTNKLVIKTKNVQFL 237
FC + + + I + PL +LVIKTK+V+F+
Sbjct: 181 FCGLAATIFSICM-YASPLSIMRLVIKTKSVEFM 213
>03_06_0370 +
33431696-33432217,33432521-33432796,33433003-33433183,
33433253-33433455,33433545-33433732,33433844-33434105
Length = 543
Score = 25.4 bits (53), Expect = 6.5
Identities = 12/28 (42%), Positives = 14/28 (50%)
Frame = -2
Query: 189 WLFKFFPNNLHHTEHNAKLMSLFHRLHL 106
W KF P LHH N L S + LH+
Sbjct: 366 WPDKFIPRWLHHMVTNTVLDSDLYLLHI 393
>12_02_0284 -
16791153-16791212,16791392-16791925,16792266-16792637,
16793754-16794105,16794107-16794795,16821179-16821574
Length = 800
Score = 25.0 bits (52), Expect = 8.6
Identities = 15/33 (45%), Positives = 20/33 (60%)
Frame = +1
Query: 181 KEPLPTNKLVIKTKNVQFLNVNKIRAKLQKKKK 279
K PLPT ++V T++ N I KLQ+KKK
Sbjct: 316 KRPLPTTEVVKLTEHCN----NLILHKLQEKKK 344
>11_04_0426 -
17573681-17574010,17574163-17574282,17574382-17574754,
17575051-17575087,17575821-17575872
Length = 303
Score = 25.0 bits (52), Expect = 8.6
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = +1
Query: 139 CVMFSVVQIIWKKFKEPLPTNKLVIKTKNVQFL 237
CV FSV F PL +LV++TK+V+F+
Sbjct: 139 CVGFSV-----SVFVAPLSIIRLVVRTKSVEFM 166
>05_03_0214 + 10345898-10346728
Length = 276
Score = 25.0 bits (52), Expect = 8.6
Identities = 15/33 (45%), Positives = 20/33 (60%)
Frame = +1
Query: 181 KEPLPTNKLVIKTKNVQFLNVNKIRAKLQKKKK 279
K PLPT ++V T++ N I KLQ+KKK
Sbjct: 17 KRPLPTTEVVKLTEHCS----NLILHKLQEKKK 45
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,410,672
Number of Sequences: 37544
Number of extensions: 131603
Number of successful extensions: 328
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 326
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 328
length of database: 14,793,348
effective HSP length: 70
effective length of database: 12,165,268
effective search space used: 267635896
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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