Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc9k24
         (280 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014296-276|AAN11487.1| 1449|Drosophila melanogaster CG7852-PB,...    29   0.67 
AE014296-275|AAF47507.1| 1449|Drosophila melanogaster CG7852-PA,...    29   0.67 
AY058787-1|AAL14016.1|  525|Drosophila melanogaster SD08430p pro...    27   2.7  
AE014296-2800|AAN11741.1|  525|Drosophila melanogaster CG9706-PB...    27   2.7  
AE014296-2799|AAF49413.1|  525|Drosophila melanogaster CG9706-PA...    27   2.7  
AJ749862-1|CAG44484.1|  428|Drosophila melanogaster Cabut protein.     27   4.7  
AE014134-114|AAF51489.2|  428|Drosophila melanogaster CG4427-PA,...    27   4.7  

>AE014296-276|AAN11487.1| 1449|Drosophila melanogaster CG7852-PB,
            isoform B protein.
          Length = 1449

 Score = 29.5 bits (63), Expect = 0.67
 Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = -2

Query: 219  CLNHQFVCG*WLFKFFPNNLHHTEHNAKLMSLF-HRLHLWM*TSS 88
            CL   F+CG    +FF  NL+  ++  K+  LF H L + +  SS
Sbjct: 1284 CLEQVFLCGFRSARFFGRNLYIWDYFTKIKELFEHNLQMELEDSS 1328


>AE014296-275|AAF47507.1| 1449|Drosophila melanogaster CG7852-PA,
            isoform A protein.
          Length = 1449

 Score = 29.5 bits (63), Expect = 0.67
 Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = -2

Query: 219  CLNHQFVCG*WLFKFFPNNLHHTEHNAKLMSLF-HRLHLWM*TSS 88
            CL   F+CG    +FF  NL+  ++  K+  LF H L + +  SS
Sbjct: 1284 CLEQVFLCGFRSARFFGRNLYIWDYFTKIKELFEHNLQMELEDSS 1328


>AY058787-1|AAL14016.1|  525|Drosophila melanogaster SD08430p
           protein.
          Length = 525

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 10/37 (27%), Positives = 18/37 (48%)
 Frame = +2

Query: 8   WLIDLLAWLVCDFELDETRKRHEKEVGEDVYIHKCSL 118
           WL+D+L W  C    + T +  E++   +    KC +
Sbjct: 443 WLVDVLTWKQCSNNAENTCQGKEEQQSCEASAGKCEI 479


>AE014296-2800|AAN11741.1|  525|Drosophila melanogaster CG9706-PB,
           isoform B protein.
          Length = 525

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 10/37 (27%), Positives = 18/37 (48%)
 Frame = +2

Query: 8   WLIDLLAWLVCDFELDETRKRHEKEVGEDVYIHKCSL 118
           WL+D+L W  C    + T +  E++   +    KC +
Sbjct: 443 WLVDVLTWKQCSNNAENTCQGKEEQQSCEASAGKCEI 479


>AE014296-2799|AAF49413.1|  525|Drosophila melanogaster CG9706-PA,
           isoform A protein.
          Length = 525

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 10/37 (27%), Positives = 18/37 (48%)
 Frame = +2

Query: 8   WLIDLLAWLVCDFELDETRKRHEKEVGEDVYIHKCSL 118
           WL+D+L W  C    + T +  E++   +    KC +
Sbjct: 443 WLVDVLTWKQCSNNAENTCQGKEEQQSCEASAGKCEI 479


>AJ749862-1|CAG44484.1|  428|Drosophila melanogaster Cabut protein.
          Length = 428

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = +1

Query: 187 PLPTNKLVIKTKNVQFLNVNKIRAKLQ 267
           PL  NKL I  K+ Q +N N ++AKL+
Sbjct: 15  PLRENKLEIVAKDEQQVNENLLKAKLK 41


>AE014134-114|AAF51489.2|  428|Drosophila melanogaster CG4427-PA,
           isoform A protein.
          Length = 428

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = +1

Query: 187 PLPTNKLVIKTKNVQFLNVNKIRAKLQ 267
           PL  NKL I  K+ Q +N N ++AKL+
Sbjct: 15  PLRENKLEIVAKDEQQVNENLLKAKLK 41


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,814,543
Number of Sequences: 53049
Number of extensions: 237871
Number of successful extensions: 867
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 864
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 867
length of database: 24,988,368
effective HSP length: 71
effective length of database: 21,221,889
effective search space used: 445659669
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)