Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc9k24
(280 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY383563-2|AAQ96594.1| 533|Caenorhabditis elegans excitatory GA... 29 0.37
AY383563-1|AAQ96595.1| 539|Caenorhabditis elegans excitatory GA... 29 0.37
AF098990-1|AAC67448.3| 539|Caenorhabditis elegans Expulsion def... 29 0.37
U29488-5|AAL27236.1| 417|Caenorhabditis elegans Hypothetical pr... 27 1.5
U29488-4|AAL27235.1| 401|Caenorhabditis elegans Hypothetical pr... 27 1.5
AF125446-2|AAD12805.1| 379|Caenorhabditis elegans Hypothetical ... 27 1.5
Z70750-12|CAA94748.2| 363|Caenorhabditis elegans Hypothetical p... 27 2.6
AF323969-1|AAK50396.1| 363|Caenorhabditis elegans GDP-fucose tr... 27 2.6
Z66512-9|CAA91328.3| 253|Caenorhabditis elegans Hypothetical pr... 26 3.5
Z48638-12|CAA88573.3| 253|Caenorhabditis elegans Hypothetical p... 26 3.5
AL117204-34|CAB55140.2| 348|Caenorhabditis elegans Hypothetical... 26 4.6
Z47745-4|CAA87665.2| 445|Caenorhabditis elegans Hypothetical pr... 25 6.1
AM748823-1|CAO72177.1| 491|Caenorhabditis elegans hexosaminidas... 25 6.1
Z68880-3|CAA93096.1| 138|Caenorhabditis elegans Hypothetical pr... 25 8.0
U80454-8|ABC71798.1| 623|Caenorhabditis elegans Hypothetical pr... 25 8.0
U53338-3|AAA96191.1| 534|Caenorhabditis elegans Ammonium transp... 25 8.0
U50184-1|ABJ99064.1| 1540|Caenorhabditis elegans Hypothetical pr... 25 8.0
AC006673-2|AAF39928.1| 300|Caenorhabditis elegans Serpentine re... 25 8.0
>AY383563-2|AAQ96594.1| 533|Caenorhabditis elegans excitatory GABA
receptor EXP-1A protein.
Length = 533
Score = 29.5 bits (63), Expect = 0.37
Identities = 14/28 (50%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Frame = -1
Query: 280 FFFSFVIWLLFY-LHLKTVHFLS*SPVC 200
FFF FVI+ LFY L +H +S P C
Sbjct: 494 FFFGFVIFCLFYFLIYPNLHIVSVDPAC 521
>AY383563-1|AAQ96595.1| 539|Caenorhabditis elegans excitatory GABA
receptor EXP-1B protein.
Length = 539
Score = 29.5 bits (63), Expect = 0.37
Identities = 14/28 (50%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Frame = -1
Query: 280 FFFSFVIWLLFY-LHLKTVHFLS*SPVC 200
FFF FVI+ LFY L +H +S P C
Sbjct: 500 FFFGFVIFCLFYFLIYPNLHIVSVDPAC 527
>AF098990-1|AAC67448.3| 539|Caenorhabditis elegans Expulsion
defective (defecation)protein 1 protein.
Length = 539
Score = 29.5 bits (63), Expect = 0.37
Identities = 14/28 (50%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Frame = -1
Query: 280 FFFSFVIWLLFY-LHLKTVHFLS*SPVC 200
FFF FVI+ LFY L +H +S P C
Sbjct: 500 FFFGFVIFCLFYFLIYPNLHIVSVDPAC 527
>U29488-5|AAL27236.1| 417|Caenorhabditis elegans Hypothetical
protein C56C10.7b protein.
Length = 417
Score = 27.5 bits (58), Expect = 1.5
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = +3
Query: 84 SEKTFTSISAACEIMTSILRYV 149
SEKT +S+S CE+ TS R V
Sbjct: 92 SEKTVSSVSLKCELQTSTQRVV 113
>U29488-4|AAL27235.1| 401|Caenorhabditis elegans Hypothetical
protein C56C10.7a protein.
Length = 401
Score = 27.5 bits (58), Expect = 1.5
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = +3
Query: 84 SEKTFTSISAACEIMTSILRYV 149
SEKT +S+S CE+ TS R V
Sbjct: 92 SEKTVSSVSLKCELQTSTQRVV 113
>AF125446-2|AAD12805.1| 379|Caenorhabditis elegans Hypothetical
protein R05C11.2 protein.
Length = 379
Score = 27.5 bits (58), Expect = 1.5
Identities = 13/35 (37%), Positives = 22/35 (62%)
Frame = -1
Query: 142 RKIDVIISQAALMDVNVFSDLLLVSFSCFIKLKIT 38
RK+D+I+ +L +V D+ LVS F++ K+T
Sbjct: 268 RKVDIILDSLSLKNVIYLRDMFLVS-PDFLQFKVT 301
>Z70750-12|CAA94748.2| 363|Caenorhabditis elegans Hypothetical
protein C50F4.14 protein.
Length = 363
Score = 26.6 bits (56), Expect = 2.6
Identities = 13/47 (27%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Frame = -3
Query: 248 LFTFKN-CTFFVLITSLFVGNGSLNFFQIICTTLNITQN*CHYFTGC 111
+ +F N C +V ++ +VG F ++CT L + Q GC
Sbjct: 113 MISFNNLCLKYVGVSFYYVGRSLTTVFNVVCTYLILGQKTSGQAIGC 159
>AF323969-1|AAK50396.1| 363|Caenorhabditis elegans GDP-fucose
transporter protein.
Length = 363
Score = 26.6 bits (56), Expect = 2.6
Identities = 13/47 (27%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Frame = -3
Query: 248 LFTFKN-CTFFVLITSLFVGNGSLNFFQIICTTLNITQN*CHYFTGC 111
+ +F N C +V ++ +VG F ++CT L + Q GC
Sbjct: 113 MISFNNLCLKYVGVSFYYVGRSLTTVFNVVCTYLILGQKTSGQAIGC 159
>Z66512-9|CAA91328.3| 253|Caenorhabditis elegans Hypothetical
protein ZK892.5 protein.
Length = 253
Score = 26.2 bits (55), Expect = 3.5
Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Frame = -3
Query: 269 FCNLALILFTF--KNCTFFVLITSLFVGNGSLNFFQI 165
F ++L+ F+ K C V +T L+ SL FQI
Sbjct: 73 FLVISLVYFSIFTKKCALLVFLTLLYFAAASLKLFQI 109
>Z48638-12|CAA88573.3| 253|Caenorhabditis elegans Hypothetical
protein ZK892.5 protein.
Length = 253
Score = 26.2 bits (55), Expect = 3.5
Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Frame = -3
Query: 269 FCNLALILFTF--KNCTFFVLITSLFVGNGSLNFFQI 165
F ++L+ F+ K C V +T L+ SL FQI
Sbjct: 73 FLVISLVYFSIFTKKCALLVFLTLLYFAAASLKLFQI 109
>AL117204-34|CAB55140.2| 348|Caenorhabditis elegans Hypothetical
protein Y116A8C.40 protein.
Length = 348
Score = 25.8 bits (54), Expect = 4.6
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = +2
Query: 113 SL*NNDINFALCSVWCRLFG 172
S+ N D++F L ++C LFG
Sbjct: 75 SIFNRDVSFVLVCIYCGLFG 94
>Z47745-4|CAA87665.2| 445|Caenorhabditis elegans Hypothetical
protein T19H5.1 protein.
Length = 445
Score = 25.4 bits (53), Expect = 6.1
Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Frame = -3
Query: 194 GNGSLNF--FQIICTTLNITQN*CHYFTGCT 108
GN LN F +CTT N+ + C Y+ G T
Sbjct: 404 GNSQLNAISFDGLCTTGNVPKYDCSYWNGNT 434
>AM748823-1|CAO72177.1| 491|Caenorhabditis elegans hexosaminidase
protein.
Length = 491
Score = 25.4 bits (53), Expect = 6.1
Identities = 13/60 (21%), Positives = 24/60 (40%)
Frame = +2
Query: 2 NYWLIDLLAWLVCDFELDETRKRHEKEVGEDVYIHKCSL*NNDINFALCSVWCRLFGKNL 181
NY L + AW L+ +RH + + + +H C D+ + W R + +
Sbjct: 372 NYQLTEKDAWRAMKSSLECENRRHLRGILAESTVHGCKFPGADVFEIIMHDWKRAVDRRI 431
>Z68880-3|CAA93096.1| 138|Caenorhabditis elegans Hypothetical
protein T14G10.4 protein.
Length = 138
Score = 25.0 bits (52), Expect = 8.0
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = -3
Query: 278 FFFFCNLALILFTFKNCTFFV 216
F C+LAL+ + NC +FV
Sbjct: 7 FLILCSLALLCSSANNCAWFV 27
>U80454-8|ABC71798.1| 623|Caenorhabditis elegans Hypothetical
protein T16A1.1b protein.
Length = 623
Score = 25.0 bits (52), Expect = 8.0
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = +1
Query: 178 FKEPLPTNKLVIKTKNVQFLNVNKIRAKLQKKKK 279
F + LP + LVIK + N+N+ K KK
Sbjct: 549 FTDDLPASSLVIKHVVEEISNINEAEYNYSKTKK 582
>U53338-3|AAA96191.1| 534|Caenorhabditis elegans Ammonium
transporter homolog protein1 protein.
Length = 534
Score = 25.0 bits (52), Expect = 8.0
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = -3
Query: 275 FFFCNLALILFTFKNCTFFVL 213
FF C++ALI+F F C F L
Sbjct: 32 FFLCSMALIIF-FMQCGFAYL 51
>U50184-1|ABJ99064.1| 1540|Caenorhabditis elegans Hypothetical protein
W03A3.2 protein.
Length = 1540
Score = 25.0 bits (52), Expect = 8.0
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +1
Query: 190 LPTNKLVIKTKNVQFLNVNKI 252
LPTNKL+++ N Q V KI
Sbjct: 1234 LPTNKLILEQMNTQHPIVGKI 1254
>AC006673-2|AAF39928.1| 300|Caenorhabditis elegans Serpentine
receptor, class x protein62 protein.
Length = 300
Score = 25.0 bits (52), Expect = 8.0
Identities = 8/30 (26%), Positives = 18/30 (60%)
Frame = -3
Query: 248 LFTFKNCTFFVLITSLFVGNGSLNFFQIIC 159
+F KN +++ LF G+ ++ ++I+C
Sbjct: 118 IFNEKNSKILIILIWLFTGSVAIYLYEILC 147
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,880,535
Number of Sequences: 27780
Number of extensions: 136654
Number of successful extensions: 459
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 443
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 459
length of database: 12,740,198
effective HSP length: 69
effective length of database: 10,823,378
effective search space used: 248937694
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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