Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc9k24
         (280 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    27   0.057
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    21   2.1  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    20   4.9  
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    20   6.5  
AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    20   6.5  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    20   6.5  
EF051030-1|ABN05618.1|  118|Apis mellifera phosphoenolpyruvate c...    19   8.6  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    19   8.6  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    19   8.6  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    19   8.6  

>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 26.6 bits (56), Expect = 0.057
 Identities = 15/40 (37%), Positives = 20/40 (50%)
 Frame = +3

Query: 6   IGS*TYWLGWFVILSLMKQENDTRRRSEKTFTSISAACEI 125
           IG+   WL W    S   + +D +R    T  SISA+C I
Sbjct: 215 IGTIFLWLFWPSFNSAALEGDDQQRAIINTLLSISASCVI 254


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 21.4 bits (43), Expect = 2.1
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = -3

Query: 197 VGNGSLNFFQIICTTLNITQN*CHYFTGC 111
           + NG LNF ++    LN   N    +T C
Sbjct: 383 IANGDLNFNEVNFRILNAPVNQLIRYTRC 411


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 20.2 bits (40), Expect = 4.9
 Identities = 8/17 (47%), Positives = 14/17 (82%)
 Frame = +3

Query: 102 SISAACEIMTSILRYVQ 152
           +++A   ++TSILRY+Q
Sbjct: 315 ALAAFSLMLTSILRYLQ 331


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 19.8 bits (39), Expect = 6.5
 Identities = 9/21 (42%), Positives = 10/21 (47%)
 Frame = +2

Query: 83  VGEDVYIHKCSL*NNDINFAL 145
           V ED Y + C   N D  F L
Sbjct: 555 VSEDAYRYLCMPENQDSQFLL 575


>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 19.8 bits (39), Expect = 6.5
 Identities = 8/29 (27%), Positives = 15/29 (51%)
 Frame = -1

Query: 136 IDVIISQAALMDVNVFSDLLLVSFSCFIK 50
           IDV +    ++D     D+ L+  +C I+
Sbjct: 96  IDVTLQNDEVLDWKKIFDINLLGLTCMIQ 124


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 19.8 bits (39), Expect = 6.5
 Identities = 9/21 (42%), Positives = 10/21 (47%)
 Frame = +2

Query: 83  VGEDVYIHKCSL*NNDINFAL 145
           V ED Y + C   N D  F L
Sbjct: 555 VSEDAYRYLCMPENQDSQFLL 575


>EF051030-1|ABN05618.1|  118|Apis mellifera phosphoenolpyruvate
           carboxykinase protein.
          Length = 118

 Score = 19.4 bits (38), Expect = 8.6
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = +2

Query: 74  EKEVGEDVYI 103
           EKEVG+D+ I
Sbjct: 108 EKEVGDDIEI 117


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 19.4 bits (38), Expect = 8.6
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = +1

Query: 166 IWKKFKEPLPTNKLVIKTK 222
           +W  F E  P N++ I+ K
Sbjct: 73  LWTPFIERGPANRMYIEIK 91


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 19.4 bits (38), Expect = 8.6
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = -3

Query: 128 HYFTGCTYGCKRLLRPPSRVVF 63
           H F     G   ++ PPSRV F
Sbjct: 21  HGFDAHLRGPSFVMEPPSRVEF 42


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 19.4 bits (38), Expect = 8.6
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = -3

Query: 128 HYFTGCTYGCKRLLRPPSRVVF 63
           H F     G   ++ PPSRV F
Sbjct: 21  HGFDAHLRGPSFVMEPPSRVEF 42


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 80,440
Number of Sequences: 438
Number of extensions: 1397
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 49
effective length of database: 124,881
effective search space used:  5369883
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)