Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc9k21
         (692 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    27   0.13 
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    23   2.1  
DQ855485-1|ABH88172.1|  128|Apis mellifera chemosensory protein ...    23   3.6  
AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength rhodo...    23   3.6  
AJ973400-1|CAJ01447.1|  128|Apis mellifera hypothetical protein ...    23   3.6  
AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alph...    22   4.8  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    22   6.4  
AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex det...    22   6.4  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 27.5 bits (58), Expect = 0.13
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +3

Query: 504 DTNSQVSKHHGAGDEGSHSCHGYHEQTTKH 593
           +T+ QV++ HG    GSHS  G   + +KH
Sbjct: 688 NTHFQVNQSHGIKRSGSHSWEGDSFKVSKH 717


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 18/89 (20%), Positives = 40/89 (44%), Gaps = 2/89 (2%)
 Frame = +1

Query: 340  KMEQQEKKVIADIKKLAKEGQMDAVK--IMAKDLVRTRRYVRKFMLMKANIQAVSLKIQT 513
            + +QQ++K++A +   +  GQ+ +V+  +  K L           L +   Q +  + Q 
Sbjct: 1105 QQQQQQQKILAKVLTSSNSGQLISVENLLAQKGLKLATTASHANQLNRQGKQVIQTQYQV 1164

Query: 514  LKSQSTMAQAMKGVTRAMATMNRQLNMPQ 600
            +    + AQ   G ++ +A+  +Q    Q
Sbjct: 1165 V----SQAQTSSGQSKIIASTQQQQQSQQ 1189


>DQ855485-1|ABH88172.1|  128|Apis mellifera chemosensory protein 4
           protein.
          Length = 128

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = -2

Query: 226 VCFLQFECSRTDKYSTIY 173
           VCFL  E    DKY+T Y
Sbjct: 11  VCFLLGEVFSEDKYTTKY 28


>AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 152

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = -2

Query: 148 SLRG*QLIYYIFFSSLSVANTSNIIKKFKVITIYCLRFGM 29
           S+ G  ++ YIF S+ S+   SN+      I+ + + F M
Sbjct: 32  SVMGNGMVVYIFLSTKSLRTPSNLFVINLAISDFLMMFCM 71


>AJ973400-1|CAJ01447.1|  128|Apis mellifera hypothetical protein
           protein.
          Length = 128

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = -2

Query: 226 VCFLQFECSRTDKYSTIY 173
           VCFL  E    DKY+T Y
Sbjct: 11  VCFLLGEVFSEDKYTTKY 28


>AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alpha
           protein precursor protein.
          Length = 153

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 8/32 (25%), Positives = 15/32 (46%)
 Frame = +3

Query: 408 CC*NYGKRLSTYQTICPQVHANESEHPSGVTE 503
           CC   G+R ++    CP+    E +    +T+
Sbjct: 77  CCQESGEREASVSLFCPRAKPGEKKFRKVITK 108


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = -2

Query: 148 SLRG*QLIYYIFFSSLSVANTSNIIKKFKVITIYCLRFGM 29
           S  G  ++ YIF S+ S+   SN+      I+ + + F M
Sbjct: 66  SAMGNGMVVYIFLSTKSLRTPSNLFVINLAISNFLMMFCM 105


>AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 10/42 (23%), Positives = 21/42 (50%)
 Frame = +1

Query: 250 FGHKMTPDEMLRKNQRALNKAMRDLDRERMKMEQQEKKVIAD 375
           F H  +     R+  R  N+  R  DR+  K+  +++K++ +
Sbjct: 224 FQHTSSRYSRERRCSRDRNREYRKKDRQYEKLHNEKEKLLEE 265


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 163,704
Number of Sequences: 438
Number of extensions: 3269
Number of successful extensions: 27
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21195810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)