Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc9k04
         (474 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC970.11c |wtf9||wtf element, Wtf2, pseudo|Schizosaccharomyces...    26   2.5  
SPCC794.02 |wtf5||wtf element Wtf5|Schizosaccharomyces pombe|chr...    25   7.8  
SPCC1450.08c |wtf16||wtf element Wtf16|Schizosaccharomyces pombe...    25   7.8  
SPCC1183.10 |wtf10||wtf element Wtf10|Schizosaccharomyces pombe|...    25   7.8  

>SPCC970.11c |wtf9||wtf element, Wtf2, pseudo|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 333

 Score = 26.2 bits (55), Expect = 2.5
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -1

Query: 282 FFCYYCTLIKII*VIFYKTNEKA 214
           F+C+ CTL  I    FY+T  KA
Sbjct: 115 FWCFVCTLALIFLTYFYETWTKA 137


>SPCC794.02 |wtf5||wtf element Wtf5|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 269

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = -1

Query: 282 FFCYYCTLIKII*VIFYKTNEKA 214
           F+C  CTL  I    FY+T  KA
Sbjct: 115 FWCLVCTLALIFLTYFYETWTKA 137


>SPCC1450.08c |wtf16||wtf element Wtf16|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 349

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = -1

Query: 282 FFCYYCTLIKII*VIFYKTNEKA 214
           F+C  CTL  I    FY+T  KA
Sbjct: 115 FWCLVCTLALIFLTYFYETWTKA 137


>SPCC1183.10 |wtf10||wtf element Wtf10|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 258

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = -1

Query: 282 FFCYYCTLIKII*VIFYKTNEKA 214
           F+C  CTL  I    FY+T  KA
Sbjct: 115 FWCLVCTLALIFLTYFYETWTKA 137


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,828,184
Number of Sequences: 5004
Number of extensions: 35096
Number of successful extensions: 55
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 55
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 182448900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)