Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc9k04
         (474 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_06_0063 + 10255170-10255372,10255418-10255442,10255771-10255935     29   1.9  
06_01_1196 + 10289708-10289823,10290828-10291541,10291614-102920...    28   3.3  
11_03_0083 + 9691434-9691636,9692012-9692021                           27   7.7  

>10_06_0063 + 10255170-10255372,10255418-10255442,10255771-10255935
          Length = 130

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 14/51 (27%), Positives = 29/51 (56%)
 Frame = +3

Query: 78  TKLSRADRMERSANTTWT*NICRSQSNFLYEKI*DDICAHIMYSFTLFHLS 230
           T++    R E S +TTW+  I ++ S+  Y+K+ D + ++   +  + H+S
Sbjct: 24  TRVCAPTRSEPSLSTTWSIEIIQASSSVAYQKMSDHMISNEYAARYIRHIS 74


>06_01_1196 +
           10289708-10289823,10290828-10291541,10291614-10292058,
           10292329-10293642
          Length = 862

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 15/33 (45%), Positives = 19/33 (57%)
 Frame = +3

Query: 60  LPPIFTTKLSRADRMERSANTTWT*NICRSQSN 158
           LP IFT  +S +DR E+ AN        RS+SN
Sbjct: 565 LPMIFTPSVSTSDRAEKIANLHLATKSFRSKSN 597


>11_03_0083 + 9691434-9691636,9692012-9692021
          Length = 70

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 11/33 (33%), Positives = 22/33 (66%)
 Frame = +3

Query: 99  RMERSANTTWT*NICRSQSNFLYEKI*DDICAH 197
           R E S++TTW+  I ++ S+  Y+K+ D + ++
Sbjct: 31  RSEPSSSTTWSIEIIQASSSVAYQKMSDHMISN 63


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,580,984
Number of Sequences: 37544
Number of extensions: 182941
Number of successful extensions: 274
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 273
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 274
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 967140324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)