Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc9k04
         (474 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132841-2|CAB60332.1|  469|Caenorhabditis elegans Hypothetical ...    27   5.2  
U58753-4|AAC24435.2|  312|Caenorhabditis elegans Hypothetical pr...    27   6.9  
AF036705-10|AAB95167.2|  612|Caenorhabditis elegans Hypothetical...    27   9.1  
AC006673-10|AAP31433.1|  361|Caenorhabditis elegans Serpentine r...    27   9.1  

>AL132841-2|CAB60332.1|  469|Caenorhabditis elegans Hypothetical
           protein Y15E3A.4 protein.
          Length = 469

 Score = 27.5 bits (58), Expect = 5.2
 Identities = 16/41 (39%), Positives = 23/41 (56%)
 Frame = +1

Query: 40  VNLLAEPYRLFLPRSYLELIEWNGQRIRHGLKTSVGVNLIF 162
           ++L  EP  +FL  S+  L EW    + HG+   VG N+IF
Sbjct: 395 LSLFIEPLLVFLICSHNTLEEWRIVFLTHGILLIVG-NIIF 434


>U58753-4|AAC24435.2|  312|Caenorhabditis elegans Hypothetical
           protein W03B1.7 protein.
          Length = 312

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +1

Query: 157 IFYMKRYKMIFAHTLCIALRFFICLIKY 240
           IFY +R+K I    L I L   ICL K+
Sbjct: 39  IFYSRRFKRILPLYLLIILISMICLYKF 66


>AF036705-10|AAB95167.2|  612|Caenorhabditis elegans Hypothetical
           protein F37C4.1 protein.
          Length = 612

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 18/46 (39%), Positives = 22/46 (47%)
 Frame = +1

Query: 157 IFYMKRYKMIFAHTLCIALRFFICLIKYHLNYFN*GTIITKKTCAI 294
           +FY KR+K I    L I L   ICL     N+F    I T K  A+
Sbjct: 71  LFYSKRFKRILPLYLLIILISMICL----YNFFPDTAIETNKESAV 112


>AC006673-10|AAP31433.1|  361|Caenorhabditis elegans Serpentine
           receptor, class w protein89 protein.
          Length = 361

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 23/88 (26%), Positives = 39/88 (44%), Gaps = 6/88 (6%)
 Frame = +1

Query: 10  GEKLSGLSVWVNLLAEPYRLFLPRSYLELIEWNGQRIRHGL-----KTSVGVNLIFYMKR 174
           G+  + +  W N L    RL++   + +LI      I  GL     K S  V++  + K 
Sbjct: 199 GQVSNEIFEWNNALFAKLRLYMECVFSKLITCFALPILSGLLITEMKKSAEVSIKSFKKS 258

Query: 175 YK-MIFAHTLCIALRFFICLIKYHLNYF 255
            K +    T+CIA+ +F+      + YF
Sbjct: 259 RKDLTTVITICIAISYFVSEFPLGIIYF 286


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,977,436
Number of Sequences: 27780
Number of extensions: 193812
Number of successful extensions: 393
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 391
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 393
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 860942358
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)