Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc9j23
         (140 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC11D3.04c |||SnoaL|Schizosaccharomyces pombe|chr 1|||Manual         26   0.59 
SPBC8D2.02c |||vacuolar sorting protein Vps68|Schizosaccharomyce...    25   1.0  
SPAC458.03 |||nuclear telomere cap complex subunit |Schizosaccha...    25   1.8  
SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces pomb...    23   4.2  
SPAC926.09c |fas1||fatty acid synthase beta subunit Fas1|Schizos...    23   5.5  
SPAC21E11.04 |ppr1||L-azetidine-2-carboxylic acid acetyltransfer...    23   5.5  
SPBC577.11 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    23   7.3  
SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ...    22   9.6  

>SPAC11D3.04c |||SnoaL|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 130

 Score = 26.2 bits (55), Expect = 0.59
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +2

Query: 2   FSSEIYRQLVDSRHVSSDSFGVYVKS*SLILHSFGLLV 115
           F +  YRQLVD R ++ D F  + K+    LH   + V
Sbjct: 29  FLTPDYRQLVDGRELTLDDFISHAKALRTHLHRLDINV 66


>SPBC8D2.02c |||vacuolar sorting protein Vps68|Schizosaccharomyces
          pombe|chr 2|||Manual
          Length = 170

 Score = 25.4 bits (53), Expect = 1.0
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = +2

Query: 8  SEIYRQLVDSRHVSSDSFGVY 70
          S I+R  + S HVSS S GVY
Sbjct: 6  SSIFRFRLSSLHVSSRSLGVY 26


>SPAC458.03 |||nuclear telomere cap complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 868

 Score = 24.6 bits (51), Expect = 1.8
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +1

Query: 7   LRDLPPVGRFSPCFFRLLWSLRKILIPYSSQFW 105
           L++L  +G  SPC  RL   L  +++P    FW
Sbjct: 21  LKELQHIGVPSPCNLRLYHELISVIVP---TFW 50


>SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1254

 Score = 23.4 bits (48), Expect = 4.2
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -3

Query: 60  KESEETWRESTNWR*ISEE 4
           KE  E W  + NW+  SEE
Sbjct: 809 KEELEAWTRAFNWQKASEE 827


>SPAC926.09c |fas1||fatty acid synthase beta subunit
           Fas1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2073

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -2

Query: 106 PKTVKNKGLRFYVDSK 59
           PK VKNK  R YVD++
Sbjct: 557 PKLVKNKLGRVYVDTR 572


>SPAC21E11.04 |ppr1||L-azetidine-2-carboxylic acid acetyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 209

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = -2

Query: 64  SKGVGRNMARIY 29
           SKG+GRN+A  Y
Sbjct: 129 SKGIGRNLANAY 140


>SPBC577.11 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 239

 Score = 22.6 bits (46), Expect = 7.3
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +2

Query: 2   FSSEIYRQLVDSRHVSSDSF 61
           F + +YRQLV S  +  DSF
Sbjct: 131 FRNRVYRQLVVSVMLDPDSF 150


>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2344

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 6/16 (37%), Positives = 13/16 (81%)
 Frame = -1

Query: 86   GIKILRRLQRSRKKHG 39
            G+++ RR+++  +KHG
Sbjct: 2271 GLEVTRRMRKIERKHG 2286


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 571,974
Number of Sequences: 5004
Number of extensions: 7291
Number of successful extensions: 19
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 2,362,478
effective HSP length: 27
effective length of database: 2,227,370
effective search space used: 42320030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)