Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc9j23
         (140 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    20   2.3  
DQ325130-1|ABD14144.1|  174|Apis mellifera complementary sex det...    19   4.1  
DQ325129-1|ABD14143.1|  174|Apis mellifera complementary sex det...    19   4.1  
DQ325128-1|ABD14142.1|  174|Apis mellifera complementary sex det...    19   4.1  
DQ325127-1|ABD14141.1|  174|Apis mellifera complementary sex det...    19   4.1  
DQ325126-1|ABD14140.1|  174|Apis mellifera complementary sex det...    19   4.1  
DQ325125-1|ABD14139.1|  174|Apis mellifera complementary sex det...    19   4.1  
DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid p...    19   4.1  
AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatas...    19   4.1  
EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate isome...    19   5.4  
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    19   7.2  
AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone este...    19   7.2  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    19   7.2  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    19   7.2  
AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.           19   7.2  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    18   9.5  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    18   9.5  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    18   9.5  

>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 20.2 bits (40), Expect = 2.3
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -3

Query: 135 FLLERDETNNPKL 97
           F L+ DE+ +PKL
Sbjct: 80  FFLKNDESESPKL 92


>DQ325130-1|ABD14144.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 19.4 bits (38), Expect = 4.1
 Identities = 6/9 (66%), Positives = 6/9 (66%)
 Frame = +3

Query: 3   FPPRSTASW 29
           FPPR   SW
Sbjct: 123 FPPRPMGSW 131


>DQ325129-1|ABD14143.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 19.4 bits (38), Expect = 4.1
 Identities = 6/9 (66%), Positives = 6/9 (66%)
 Frame = +3

Query: 3   FPPRSTASW 29
           FPPR   SW
Sbjct: 123 FPPRPMGSW 131


>DQ325128-1|ABD14142.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 19.4 bits (38), Expect = 4.1
 Identities = 6/9 (66%), Positives = 6/9 (66%)
 Frame = +3

Query: 3   FPPRSTASW 29
           FPPR   SW
Sbjct: 123 FPPRPMGSW 131


>DQ325127-1|ABD14141.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 19.4 bits (38), Expect = 4.1
 Identities = 6/9 (66%), Positives = 6/9 (66%)
 Frame = +3

Query: 3   FPPRSTASW 29
           FPPR   SW
Sbjct: 123 FPPRPMGSW 131


>DQ325126-1|ABD14140.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 19.4 bits (38), Expect = 4.1
 Identities = 6/9 (66%), Positives = 6/9 (66%)
 Frame = +3

Query: 3   FPPRSTASW 29
           FPPR   SW
Sbjct: 123 FPPRPMGSW 131


>DQ325125-1|ABD14139.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 19.4 bits (38), Expect = 4.1
 Identities = 6/9 (66%), Positives = 6/9 (66%)
 Frame = +3

Query: 3   FPPRSTASW 29
           FPPR   SW
Sbjct: 123 FPPRPMGSW 131


>DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid
           phosphatase protein.
          Length = 373

 Score = 19.4 bits (38), Expect = 4.1
 Identities = 6/18 (33%), Positives = 9/18 (50%)
 Frame = -3

Query: 63  PKESEETWRESTNWR*IS 10
           P    + W E  NW+ I+
Sbjct: 96  PPNKLQQWNEDLNWQPIA 113


>AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatase
           precursor protein.
          Length = 388

 Score = 19.4 bits (38), Expect = 4.1
 Identities = 6/18 (33%), Positives = 9/18 (50%)
 Frame = -3

Query: 63  PKESEETWRESTNWR*IS 10
           P    + W E  NW+ I+
Sbjct: 111 PPNKLQQWNEDLNWQPIA 128


>EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate
           isomerase protein.
          Length = 247

 Score = 19.0 bits (37), Expect = 5.4
 Identities = 6/17 (35%), Positives = 11/17 (64%)
 Frame = -3

Query: 72  T*TPKESEETWRESTNW 22
           T TP++++E   +  NW
Sbjct: 174 TATPQQAQEVHEKLRNW 190


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 18.6 bits (36), Expect = 7.2
 Identities = 5/10 (50%), Positives = 9/10 (90%)
 Frame = +1

Query: 10  RDLPPVGRFS 39
           ++ PP+GRF+
Sbjct: 416 QEFPPLGRFA 425


>AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone
          esterase protein.
          Length = 567

 Score = 18.6 bits (36), Expect = 7.2
 Identities = 6/7 (85%), Positives = 7/7 (100%)
 Frame = +1

Query: 16 LPPVGRF 36
          LPPVG+F
Sbjct: 55 LPPVGKF 61


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 18.6 bits (36), Expect = 7.2
 Identities = 6/20 (30%), Positives = 12/20 (60%)
 Frame = -2

Query: 70  VDSKGVGRNMARIYQLAVDL 11
           +D K + +NM    ++ +DL
Sbjct: 173 IDLKHINQNMGDKVEIGIDL 192


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 18.6 bits (36), Expect = 7.2
 Identities = 5/10 (50%), Positives = 9/10 (90%)
 Frame = +1

Query: 10  RDLPPVGRFS 39
           ++ PP+GRF+
Sbjct: 416 QEFPPLGRFA 425


>AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.
          Length = 567

 Score = 18.6 bits (36), Expect = 7.2
 Identities = 6/7 (85%), Positives = 7/7 (100%)
 Frame = +1

Query: 16 LPPVGRF 36
          LPPVG+F
Sbjct: 55 LPPVGKF 61


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 18.2 bits (35), Expect = 9.5
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = +3

Query: 78  LNPLFFTVLGC*FHRALTK 134
           +NP+ +TV    F +A  K
Sbjct: 672 VNPVIYTVFNPEFRKAFHK 690


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 18.2 bits (35), Expect = 9.5
 Identities = 5/21 (23%), Positives = 13/21 (61%)
 Frame = +1

Query: 64  SLRKILIPYSSQFWVVSFIAL 126
           +L   L P+S+  W++  +++
Sbjct: 556 TLVSFLQPFSNTLWILVMVSV 576


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 18.2 bits (35), Expect = 9.5
 Identities = 5/13 (38%), Positives = 9/13 (69%)
 Frame = +1

Query: 7   LRDLPPVGRFSPC 45
           L ++PP+ + S C
Sbjct: 414 LLEIPPIRKISDC 426


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 38,385
Number of Sequences: 438
Number of extensions: 619
Number of successful extensions: 18
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 27
effective length of database: 134,517
effective search space used:  2555823
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)