Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc9j20
(703 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z54327-7|CAD57690.1| 268|Caenorhabditis elegans Hypothetical pr... 273 9e-74
Z54327-6|CAA91120.1| 425|Caenorhabditis elegans Hypothetical pr... 273 9e-74
U08102-1|AAB65852.1| 417|Caenorhabditis elegans putative RNA he... 273 9e-74
Z12116-1|CAA78102.1| 402|Caenorhabditis elegans protein ( C.ele... 117 9e-27
U13876-3|AAA21170.1| 402|Caenorhabditis elegans Initiation fact... 117 9e-27
EU051652-1|ABS85191.1| 973|Caenorhabditis elegans MEL-46 protein. 105 3e-23
CU457744-1|CAM36366.2| 973|Caenorhabditis elegans Hypothetical ... 105 3e-23
AC006605-1|AAK85443.1| 430|Caenorhabditis elegans Conserved ger... 97 1e-20
AC024844-2|AAK29954.2| 399|Caenorhabditis elegans Hypothetical ... 95 6e-20
AF039720-12|AAB96704.1| 399|Caenorhabditis elegans Hypothetical... 94 8e-20
AC025726-23|AAK73934.1| 763|Caenorhabditis elegans Hypothetical... 86 3e-17
AC006661-5|AAF39890.2| 488|Caenorhabditis elegans Hypothetical ... 85 6e-17
AC006661-4|ABB88208.1| 561|Caenorhabditis elegans Hypothetical ... 85 6e-17
Z29115-1|CAA82362.1| 489|Caenorhabditis elegans Hypothetical pr... 83 1e-16
AC024810-3|AAU20831.1| 660|Caenorhabditis elegans Vasa- and bel... 82 4e-16
AC024810-2|AAK68520.1| 644|Caenorhabditis elegans Vasa- and bel... 82 4e-16
AC024810-1|AAF60764.1| 641|Caenorhabditis elegans Vasa- and bel... 82 4e-16
AC024876-4|AAU05555.1| 825|Caenorhabditis elegans Hypothetical ... 80 2e-15
AC024876-3|AAU05556.1| 871|Caenorhabditis elegans Hypothetical ... 80 2e-15
U13070-1|AAK67224.1| 730|Caenorhabditis elegans Hypothetical pr... 78 7e-15
Z50071-3|CAA90407.1| 613|Caenorhabditis elegans Hypothetical pr... 73 3e-13
Z50071-2|CAA90406.1| 638|Caenorhabditis elegans Hypothetical pr... 73 3e-13
Z50071-1|CAA90408.1| 1022|Caenorhabditis elegans Hypothetical pr... 73 3e-13
Z81449-4|CAB03765.1| 811|Caenorhabditis elegans Hypothetical pr... 71 8e-13
AF045641-1|AAK68386.1| 970|Caenorhabditis elegans Hypothetical ... 71 1e-12
U80447-1|AAB37806.1| 746|Caenorhabditis elegans Hypothetical pr... 70 1e-12
AF079509-1|AAC28388.1| 720|Caenorhabditis elegans germline RNA ... 70 1e-12
AF003145-4|AAB57719.1| 720|Caenorhabditis elegans Germ-line hel... 70 1e-12
AC024859-14|AAY43989.1| 643|Caenorhabditis elegans Hypothetical... 70 1e-12
U13876-12|AAA21169.1| 363|Caenorhabditis elegans Hypothetical p... 66 2e-11
U62772-1|AAB04136.1| 763|Caenorhabditis elegans RNA helicase pr... 64 7e-11
L19948-1|AAC27384.1| 763|Caenorhabditis elegans RNA helicase pr... 64 7e-11
AF000197-1|AAB52901.2| 763|Caenorhabditis elegans Germ-line hel... 64 7e-11
AL034488-3|CAA22456.1| 504|Caenorhabditis elegans Hypothetical ... 64 1e-10
Z81555-7|CAB04518.1| 561|Caenorhabditis elegans Hypothetical pr... 62 4e-10
U60449-1|AAB03510.1| 974|Caenorhabditis elegans GLH-2 protein. 60 1e-09
U60194-1|AAB03337.1| 974|Caenorhabditis elegans RNA helicase GL... 60 1e-09
AC006625-11|AAK68269.1| 974|Caenorhabditis elegans Germ-line he... 60 1e-09
AC024753-1|AAF60456.1| 732|Caenorhabditis elegans Hypothetical ... 60 2e-09
AF025451-3|AAB71200.2| 634|Caenorhabditis elegans Hypothetical ... 58 6e-09
AF067608-1|AAC17654.2| 544|Caenorhabditis elegans Hypothetical ... 56 3e-08
Z81094-7|CAB03153.2| 960|Caenorhabditis elegans Hypothetical pr... 55 6e-08
AC006665-5|AAF39907.1| 630|Caenorhabditis elegans Hypothetical ... 55 6e-08
U80447-2|AAO38637.1| 579|Caenorhabditis elegans Hypothetical pr... 54 1e-07
Z22177-1|CAA80151.1| 578|Caenorhabditis elegans Hypothetical pr... 51 9e-07
AF079508-1|AAC28387.1| 1156|Caenorhabditis elegans germline RNA ... 42 6e-04
AF039718-2|AAB96745.2| 1156|Caenorhabditis elegans Germ-line hel... 42 6e-04
Z81074-9|CAB03040.1| 223|Caenorhabditis elegans Hypothetical pr... 28 7.4
Z81098-2|CAB03182.1| 961|Caenorhabditis elegans Hypothetical pr... 27 9.8
AF025451-4|AAL16306.1| 567|Caenorhabditis elegans Hypothetical ... 27 9.8
>Z54327-7|CAD57690.1| 268|Caenorhabditis elegans Hypothetical
protein C26D10.2b protein.
Length = 268
Score = 273 bits (669), Expect = 9e-74
Identities = 126/174 (72%), Positives = 142/174 (81%)
Frame = +1
Query: 181 KEVKGSYVSIHSSGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSG 360
++ KG+Y SIHSSGFRDFLLKPEILRAI DCGFEHPSEVQHECIPQA+LGMD++CQAKSG
Sbjct: 29 RKTKGTYASIHSSGFRDFLLKPEILRAIGDCGFEHPSEVQHECIPQAILGMDVVCQAKSG 88
Query: 361 MGKTAVFVLATLQQLEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGM 540
MGKTAVFV+ TLQQLEP + V V+ MCHTRELAFQISKEYERFSKY+ GV+V+VFFGGM
Sbjct: 89 MGKTAVFVITTLQQLEPVDGEVSVVCMCHTRELAFQISKEYERFSKYLPGVKVAVFFGGM 148
Query: 541 PIQKDEEVLKTACPHIVVGTPGRILAXXXXXXXXXXXXXXFILDECDKMLESLD 702
I+KDEE L CPHIVVGTPGR+LA F+LDECDKM+ D
Sbjct: 149 AIKKDEERLANDCPHIVVGTPGRMLALARSGKLKLDKVKYFVLDECDKMIGDAD 202
>Z54327-6|CAA91120.1| 425|Caenorhabditis elegans Hypothetical
protein C26D10.2a protein.
Length = 425
Score = 273 bits (669), Expect = 9e-74
Identities = 126/174 (72%), Positives = 142/174 (81%)
Frame = +1
Query: 181 KEVKGSYVSIHSSGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSG 360
++ KG+Y SIHSSGFRDFLLKPEILRAI DCGFEHPSEVQHECIPQA+LGMD++CQAKSG
Sbjct: 29 RKTKGTYASIHSSGFRDFLLKPEILRAIGDCGFEHPSEVQHECIPQAILGMDVVCQAKSG 88
Query: 361 MGKTAVFVLATLQQLEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGM 540
MGKTAVFV+ TLQQLEP + V V+ MCHTRELAFQISKEYERFSKY+ GV+V+VFFGGM
Sbjct: 89 MGKTAVFVITTLQQLEPVDGEVSVVCMCHTRELAFQISKEYERFSKYLPGVKVAVFFGGM 148
Query: 541 PIQKDEEVLKTACPHIVVGTPGRILAXXXXXXXXXXXXXXFILDECDKMLESLD 702
I+KDEE L CPHIVVGTPGR+LA F+LDECDKM+ D
Sbjct: 149 AIKKDEERLANDCPHIVVGTPGRMLALARSGKLKLDKVKYFVLDECDKMIGDAD 202
>U08102-1|AAB65852.1| 417|Caenorhabditis elegans putative RNA
helicase protein.
Length = 417
Score = 273 bits (669), Expect = 9e-74
Identities = 126/174 (72%), Positives = 142/174 (81%)
Frame = +1
Query: 181 KEVKGSYVSIHSSGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSG 360
++ KG+Y SIHSSGFRDFLLKPEILRAI DCGFEHPSEVQHECIPQA+LGMD++CQAKSG
Sbjct: 28 RKTKGTYASIHSSGFRDFLLKPEILRAIGDCGFEHPSEVQHECIPQAILGMDVVCQAKSG 87
Query: 361 MGKTAVFVLATLQQLEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGM 540
MGKTAVFV+ TLQQLEP + V V+ MCHTRELAFQISKEYERFSKY+ GV+V+VFFGGM
Sbjct: 88 MGKTAVFVITTLQQLEPVDGEVSVVCMCHTRELAFQISKEYERFSKYLPGVKVAVFFGGM 147
Query: 541 PIQKDEEVLKTACPHIVVGTPGRILAXXXXXXXXXXXXXXFILDECDKMLESLD 702
I+KDEE L CPHIVVGTPGR+LA F+LDECDKM+ D
Sbjct: 148 AIKKDEERLANDCPHIVVGTPGRMLALARSGKLKLDKVKYFVLDECDKMIGDAD 201
>Z12116-1|CAA78102.1| 402|Caenorhabditis elegans protein (
C.elegans mRNA for eIF-4A homologue. ).
Length = 402
Score = 117 bits (281), Expect = 9e-27
Identities = 65/168 (38%), Positives = 92/168 (54%)
Frame = +1
Query: 187 VKGSYVSIHSSGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMG 366
++G+Y + S F D LK E+LR I GFE PS +Q I G D++ QA+SG G
Sbjct: 20 IEGNYDQVVES-FDDMELKEELLRGIYGFGFEKPSAIQKRAIVPCTTGKDVIAQAQSGTG 78
Query: 367 KTAVFVLATLQQLEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPI 546
KTA F ++ LQ+++ + HV LVM TRELA QI K +Y++ V + GG +
Sbjct: 79 KTATFSVSILQRIDHEDPHVQALVMAPTRELAQQIQKVMSALGEYLN-VNILPCIGGTSV 137
Query: 547 QKDEEVLKTACPHIVVGTPGRILAXXXXXXXXXXXXXXFILDECDKML 690
+ D+ L+ H+VVGTPGR+ F+LDE D+ML
Sbjct: 138 RDDQRKLEAGI-HVVVGTPGRVGDMINRNALDTSRIKMFVLDEADEML 184
>U13876-3|AAA21170.1| 402|Caenorhabditis elegans Initiation factor
protein 1, isoforma protein.
Length = 402
Score = 117 bits (281), Expect = 9e-27
Identities = 65/168 (38%), Positives = 92/168 (54%)
Frame = +1
Query: 187 VKGSYVSIHSSGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMG 366
++G+Y + S F D LK E+LR I GFE PS +Q I G D++ QA+SG G
Sbjct: 20 IEGNYDQVVES-FDDMELKEELLRGIYGFGFEKPSAIQKRAIVPCTTGKDVIAQAQSGTG 78
Query: 367 KTAVFVLATLQQLEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPI 546
KTA F ++ LQ+++ + HV LVM TRELA QI K +Y++ V + GG +
Sbjct: 79 KTATFSVSILQRIDHEDPHVQALVMAPTRELAQQIQKVMSALGEYLN-VNILPCIGGTSV 137
Query: 547 QKDEEVLKTACPHIVVGTPGRILAXXXXXXXXXXXXXXFILDECDKML 690
+ D+ L+ H+VVGTPGR+ F+LDE D+ML
Sbjct: 138 RDDQRKLEAGI-HVVVGTPGRVGDMINRNALDTSRIKMFVLDEADEML 184
>EU051652-1|ABS85191.1| 973|Caenorhabditis elegans MEL-46 protein.
Length = 973
Score = 105 bits (252), Expect = 3e-23
Identities = 57/171 (33%), Positives = 92/171 (53%), Gaps = 1/171 (0%)
Frame = +1
Query: 190 KGSYVSIHSS-GFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMG 366
+GS + + S+ F ++ + L + + F+ PS VQ IP +LG D+L QAKSG G
Sbjct: 12 RGSSIDVQSNCTFESLMIGQKTLERLKNSQFDRPSPVQARAIPVGLLGRDMLVQAKSGTG 71
Query: 367 KTAVFVLATLQQLEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPI 546
KT VF + ++ L+ SH+ +++ TRE++ QI + + + +G R SV+ GG
Sbjct: 72 KTLVFSVLAVENLDSRSSHIQKVIVTPTREISVQIKETVRKVAP--TGARTSVYVGGSAH 129
Query: 547 QKDEEVLKTACPHIVVGTPGRILAXXXXXXXXXXXXXXFILDECDKMLESL 699
+ + LK P IV+GTPGRI F+LDE DK+++ +
Sbjct: 130 KLNLIDLKQTRPQIVIGTPGRIAQLVKLGAMNMSHVDFFVLDEADKLMDEV 180
>CU457744-1|CAM36366.2| 973|Caenorhabditis elegans Hypothetical
protein T06A10.1 protein.
Length = 973
Score = 105 bits (252), Expect = 3e-23
Identities = 57/171 (33%), Positives = 92/171 (53%), Gaps = 1/171 (0%)
Frame = +1
Query: 190 KGSYVSIHSS-GFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMG 366
+GS + + S+ F ++ + L + + F+ PS VQ IP +LG D+L QAKSG G
Sbjct: 12 RGSSIDVQSNCTFESLMIGQKTLERLKNSQFDRPSPVQARAIPVGLLGRDMLVQAKSGTG 71
Query: 367 KTAVFVLATLQQLEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPI 546
KT VF + ++ L+ SH+ +++ TRE++ QI + + + +G R SV+ GG
Sbjct: 72 KTLVFSVLAVENLDSRSSHIQKVIVTPTREISVQIKETVRKVAP--TGARTSVYVGGSAH 129
Query: 547 QKDEEVLKTACPHIVVGTPGRILAXXXXXXXXXXXXXXFILDECDKMLESL 699
+ + LK P IV+GTPGRI F+LDE DK+++ +
Sbjct: 130 KLNLIDLKQTRPQIVIGTPGRIAQLVKLGAMNMSHVDFFVLDEADKLMDEV 180
>AC006605-1|AAK85443.1| 430|Caenorhabditis elegans Conserved
germline helicase protein1 protein.
Length = 430
Score = 97.1 bits (231), Expect = 1e-20
Identities = 53/156 (33%), Positives = 85/156 (54%)
Frame = +1
Query: 223 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 402
F DF L ++L I + G+E PS +Q I A+ G DIL +AK+G GKT + + +++
Sbjct: 45 FEDFCLGRDLLMGIFEKGWEKPSPIQEASIGVALTGQDILARAKNGTGKTGAYCIPVIEK 104
Query: 403 LEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACP 582
++P+ + +V+ TRELA Q S+ SK++ ++V V GG + +D+ +
Sbjct: 105 IQPALKAIQAMVIVPTRELALQTSQICVELSKHIQ-LKVMVTTGGTDL-RDDIMRLNGTV 162
Query: 583 HIVVGTPGRILAXXXXXXXXXXXXXXFILDECDKML 690
H+V+ TPGRIL +LDE DK+L
Sbjct: 163 HLVIATPGRILDLMEKGVAKMEHCKTLVLDEADKLL 198
>AC024844-2|AAK29954.2| 399|Caenorhabditis elegans Hypothetical
protein Y65B4A.6 protein.
Length = 399
Score = 94.7 bits (225), Expect = 6e-20
Identities = 54/151 (35%), Positives = 75/151 (49%)
Frame = +1
Query: 238 LKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLEPSE 417
L+ ++LR I GFE PS +Q IP + D++ QA+SG GKTA F ++ LQ L+
Sbjct: 33 LREDLLRGIYAYGFEKPSAIQQRAIPAILKARDVIAQAQSGTGKTATFSISVLQSLDTQV 92
Query: 418 SHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACPHIVVG 597
L++ TRELA QI K YM+ V+ GG + +D L H+V G
Sbjct: 93 RETQALILSPTRELAVQIQKVVLALGDYMN-VQCHACIGGTNLGEDIRKLDYG-QHVVSG 150
Query: 598 TPGRILAXXXXXXXXXXXXXXFILDECDKML 690
TPGR+ +LDE D+ML
Sbjct: 151 TPGRVFDMIRRRNLRTRAIKLLVLDEADEML 181
>AF039720-12|AAB96704.1| 399|Caenorhabditis elegans Hypothetical
protein F33D11.10 protein.
Length = 399
Score = 94.3 bits (224), Expect = 8e-20
Identities = 53/151 (35%), Positives = 75/151 (49%)
Frame = +1
Query: 238 LKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLEPSE 417
L+ ++LR I GFE PS +Q +P + D++ QA+SG GKTA F ++ LQ L+
Sbjct: 33 LREDLLRGIYAYGFEKPSAIQQRAVPAILKARDVIAQAQSGTGKTATFSISVLQSLDTQV 92
Query: 418 SHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACPHIVVG 597
L++ TRELA QI K YM+ V+ GG + +D L H+V G
Sbjct: 93 RETQALILSPTRELAVQIQKVVLALGDYMN-VQCHACIGGTNLGEDIRKLDYG-QHVVSG 150
Query: 598 TPGRILAXXXXXXXXXXXXXXFILDECDKML 690
TPGR+ +LDE D+ML
Sbjct: 151 TPGRVFDMIRRRNLRTRAIKLLVLDEADEML 181
>AC025726-23|AAK73934.1| 763|Caenorhabditis elegans Hypothetical
protein Y71G12B.8 protein.
Length = 763
Score = 85.8 bits (203), Expect = 3e-17
Identities = 48/134 (35%), Positives = 75/134 (55%), Gaps = 3/134 (2%)
Frame = +1
Query: 223 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 402
F L +IL+A G+ P+ +Q CIP A+ G DI A +G GKTA FVL L++
Sbjct: 150 FEQMNLSRQILKACSGAGYSDPTPIQQACIPVALTGKDICACAATGTGKTAAFVLPILER 209
Query: 403 L---EPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKT 573
+ S VLV+ TRELA Q+ + + + S ++ + V + GG+ ++ E L++
Sbjct: 210 MIYRPKGASCTRVLVLVPTRELAIQVFQVFRKLSTFIQ-LEVCLCAGGLDLKAQEAALRS 268
Query: 574 ACPHIVVGTPGRIL 615
P +VV TPGR++
Sbjct: 269 G-PDVVVATPGRLI 281
>AC006661-5|AAF39890.2| 488|Caenorhabditis elegans Hypothetical
protein H20J04.4a protein.
Length = 488
Score = 84.6 bits (200), Expect = 6e-17
Identities = 51/137 (37%), Positives = 73/137 (53%), Gaps = 4/137 (2%)
Frame = +1
Query: 295 VQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLEPSESHVYVLVMCHTRELAFQIS 474
VQ CIP+ + G DIL A++G GKT F + LQ+L +Y L++ TRELAFQI+
Sbjct: 115 VQAACIPKILEGSDILGCARTGTGKTLAFAIPILQKLSVDPYGIYALILTPTRELAFQIA 174
Query: 475 KEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACPHIVVGTPGR----ILAXXXXXXXX 642
+++ K ++ ++ SV GG + L PH+VV TPGR I +
Sbjct: 175 EQFTALGKPIT-LKCSVIVGGRSLIHQARELSER-PHVVVATPGRLADLIESDPDTIAKV 232
Query: 643 XXXXXXFILDECDKMLE 693
F+LDE D+MLE
Sbjct: 233 FKKIQFFVLDEADRMLE 249
>AC006661-4|ABB88208.1| 561|Caenorhabditis elegans Hypothetical
protein H20J04.4b protein.
Length = 561
Score = 84.6 bits (200), Expect = 6e-17
Identities = 51/137 (37%), Positives = 73/137 (53%), Gaps = 4/137 (2%)
Frame = +1
Query: 295 VQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLEPSESHVYVLVMCHTRELAFQIS 474
VQ CIP+ + G DIL A++G GKT F + LQ+L +Y L++ TRELAFQI+
Sbjct: 115 VQAACIPKILEGSDILGCARTGTGKTLAFAIPILQKLSVDPYGIYALILTPTRELAFQIA 174
Query: 475 KEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACPHIVVGTPGR----ILAXXXXXXXX 642
+++ K ++ ++ SV GG + L PH+VV TPGR I +
Sbjct: 175 EQFTALGKPIT-LKCSVIVGGRSLIHQARELSER-PHVVVATPGRLADLIESDPDTIAKV 232
Query: 643 XXXXXXFILDECDKMLE 693
F+LDE D+MLE
Sbjct: 233 FKKIQFFVLDEADRMLE 249
>Z29115-1|CAA82362.1| 489|Caenorhabditis elegans Hypothetical
protein T26G10.1 protein.
Length = 489
Score = 83.4 bits (197), Expect = 1e-16
Identities = 51/176 (28%), Positives = 84/176 (47%), Gaps = 1/176 (0%)
Frame = +1
Query: 166 EVAPKKEVKGSYVSIHSSGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILC 345
+V ++ K + F + + + A G+ PS++Q +P A+ G D++
Sbjct: 27 KVVTEEIEKDDEEDVKEKSFAELGVSQPLCDACQRLGWMKPSKIQQAALPHALQGKDVIG 86
Query: 346 QAKSGMGKTAVFVLATLQQLEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSV 525
A++G GKT F + LQ L + LV+ TRELAFQI +++E + G+ +V
Sbjct: 87 LAETGSGKTGAFAIPVLQSLLDHPQAFFCLVLTPTRELAFQIGQQFEALGSGI-GLIAAV 145
Query: 526 FFGGMPIQKDEEVLKTACPHIVVGTPGRILAXXXXXXXXXXXXXXF-ILDECDKML 690
GG+ + L PHI+V TPGR++ F I+DE D++L
Sbjct: 146 IVGGVDMAAQAMALARR-PHIIVATPGRLVDHLENTKGFNLKALKFLIMDEADRIL 200
>AC024810-3|AAU20831.1| 660|Caenorhabditis elegans Vasa- and
belle-like helicase protein1, isoform c protein.
Length = 660
Score = 81.8 bits (193), Expect = 4e-16
Identities = 55/185 (29%), Positives = 88/185 (47%), Gaps = 15/185 (8%)
Frame = +1
Query: 184 EVKGSYVSIHSSGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGM 363
EV G V F + P ++ + G+ P+ VQ IP + D++ A++G
Sbjct: 128 EVSGDSVPAAIEHFNEAGFGPAVMENVNRSGYSKPTPVQKHSIPTLLANRDLMSCAQTGS 187
Query: 364 GKTAVFVLATLQQL---------EPSESH---VY---VLVMCHTRELAFQISKEYERFSK 498
GKTA F+L +Q + P+ ++ Y LV+ TRELA QI KE +FS
Sbjct: 188 GKTAAFLLPIIQHILAGGPDMVKPPAFTNGRRTYYPCALVLSPTRELAIQIHKEATKFS- 246
Query: 499 YMSGVRVSVFFGGMPIQKDEEVLKTACPHIVVGTPGRILAXXXXXXXXXXXXXXFILDEC 678
Y S ++ ++ +GG +D+ A HI++ TPGR++ +LDE
Sbjct: 247 YKSNIQTAILYGGRENYRDQVNRLRAGTHILIATPGRLIDIIEQGFIGLAGCRYLVLDEA 306
Query: 679 DKMLE 693
D+ML+
Sbjct: 307 DRMLD 311
>AC024810-2|AAK68520.1| 644|Caenorhabditis elegans Vasa- and
belle-like helicase protein1, isoform b protein.
Length = 644
Score = 81.8 bits (193), Expect = 4e-16
Identities = 55/185 (29%), Positives = 88/185 (47%), Gaps = 15/185 (8%)
Frame = +1
Query: 184 EVKGSYVSIHSSGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGM 363
EV G V F + P ++ + G+ P+ VQ IP + D++ A++G
Sbjct: 112 EVSGDSVPAAIEHFNEAGFGPAVMENVNRSGYSKPTPVQKHSIPTLLANRDLMSCAQTGS 171
Query: 364 GKTAVFVLATLQQL---------EPSESH---VY---VLVMCHTRELAFQISKEYERFSK 498
GKTA F+L +Q + P+ ++ Y LV+ TRELA QI KE +FS
Sbjct: 172 GKTAAFLLPIIQHILAGGPDMVKPPAFTNGRRTYYPCALVLSPTRELAIQIHKEATKFS- 230
Query: 499 YMSGVRVSVFFGGMPIQKDEEVLKTACPHIVVGTPGRILAXXXXXXXXXXXXXXFILDEC 678
Y S ++ ++ +GG +D+ A HI++ TPGR++ +LDE
Sbjct: 231 YKSNIQTAILYGGRENYRDQVNRLRAGTHILIATPGRLIDIIEQGFIGLAGCRYLVLDEA 290
Query: 679 DKMLE 693
D+ML+
Sbjct: 291 DRMLD 295
>AC024810-1|AAF60764.1| 641|Caenorhabditis elegans Vasa- and
belle-like helicase protein1, isoform a protein.
Length = 641
Score = 81.8 bits (193), Expect = 4e-16
Identities = 55/185 (29%), Positives = 88/185 (47%), Gaps = 15/185 (8%)
Frame = +1
Query: 184 EVKGSYVSIHSSGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGM 363
EV G V F + P ++ + G+ P+ VQ IP + D++ A++G
Sbjct: 109 EVSGDSVPAAIEHFNEAGFGPAVMENVNRSGYSKPTPVQKHSIPTLLANRDLMSCAQTGS 168
Query: 364 GKTAVFVLATLQQL---------EPSESH---VY---VLVMCHTRELAFQISKEYERFSK 498
GKTA F+L +Q + P+ ++ Y LV+ TRELA QI KE +FS
Sbjct: 169 GKTAAFLLPIIQHILAGGPDMVKPPAFTNGRRTYYPCALVLSPTRELAIQIHKEATKFS- 227
Query: 499 YMSGVRVSVFFGGMPIQKDEEVLKTACPHIVVGTPGRILAXXXXXXXXXXXXXXFILDEC 678
Y S ++ ++ +GG +D+ A HI++ TPGR++ +LDE
Sbjct: 228 YKSNIQTAILYGGRENYRDQVNRLRAGTHILIATPGRLIDIIEQGFIGLAGCRYLVLDEA 287
Query: 679 DKMLE 693
D+ML+
Sbjct: 288 DRMLD 292
>AC024876-4|AAU05555.1| 825|Caenorhabditis elegans Hypothetical
protein Y94H6A.5a protein.
Length = 825
Score = 79.8 bits (188), Expect = 2e-15
Identities = 46/161 (28%), Positives = 83/161 (51%), Gaps = 1/161 (0%)
Frame = +1
Query: 214 SSGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLAT 393
+ G++ L + +AI GF P+ +Q + IP + G D++ +++G GKTA FV+
Sbjct: 23 AGGWQQIGLDHSVYKAIEKKGFNQPTPIQRKTIPCIMDGKDVVAMSRTGSGKTAAFVIPM 82
Query: 394 LQQLEPSE-SHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLK 570
LQ+L+ + + + L++ TRELA Q K + ++ +G+R + GG I++ +
Sbjct: 83 LQKLKRRDTTGIRALMVSPTRELALQTFKVVKELGRF-TGLRCACLVGGDQIEEQFSTIH 141
Query: 571 TACPHIVVGTPGRILAXXXXXXXXXXXXXXFILDECDKMLE 693
P I++ TPGR+L + DE D++ E
Sbjct: 142 EN-PDILLATPGRLLHVIVEMDLRLSYVQYVVFDEADRLFE 181
>AC024876-3|AAU05556.1| 871|Caenorhabditis elegans Hypothetical
protein Y94H6A.5b protein.
Length = 871
Score = 79.8 bits (188), Expect = 2e-15
Identities = 46/161 (28%), Positives = 83/161 (51%), Gaps = 1/161 (0%)
Frame = +1
Query: 214 SSGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLAT 393
+ G++ L + +AI GF P+ +Q + IP + G D++ +++G GKTA FV+
Sbjct: 23 AGGWQQIGLDHSVYKAIEKKGFNQPTPIQRKTIPCIMDGKDVVAMSRTGSGKTAAFVIPM 82
Query: 394 LQQLEPSE-SHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLK 570
LQ+L+ + + + L++ TRELA Q K + ++ +G+R + GG I++ +
Sbjct: 83 LQKLKRRDTTGIRALMVSPTRELALQTFKVVKELGRF-TGLRCACLVGGDQIEEQFSTIH 141
Query: 571 TACPHIVVGTPGRILAXXXXXXXXXXXXXXFILDECDKMLE 693
P I++ TPGR+L + DE D++ E
Sbjct: 142 EN-PDILLATPGRLLHVIVEMDLRLSYVQYVVFDEADRLFE 181
>U13070-1|AAK67224.1| 730|Caenorhabditis elegans Hypothetical
protein F01F1.7 protein.
Length = 730
Score = 77.8 bits (183), Expect = 7e-15
Identities = 52/178 (29%), Positives = 86/178 (48%), Gaps = 9/178 (5%)
Frame = +1
Query: 187 VKGSYVSIHSSGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMG 366
+KG V + + E+ +A+ + G+ P+ +Q + IP + D++ A++G G
Sbjct: 291 IKGGRVPRPLRNWEEAGFPDEVYQAVKEIGYLEPTPIQRQAIPIGLQNRDVIGVAETGSG 350
Query: 367 KTAVFVL------ATLQQLEPSESH---VYVLVMCHTRELAFQISKEYERFSKYMSGVRV 519
KTA F+L +L ++E E Y ++M TRELA QI +E +F K + V
Sbjct: 351 KTAAFLLPLLVWITSLPKMERQEHRDLGPYAIIMAPTRELAQQIEEETNKFGKLLGIKTV 410
Query: 520 SVFFGGMPIQKDEEVLKTACPHIVVGTPGRILAXXXXXXXXXXXXXXFILDECDKMLE 693
SV G ++D+ + +V+ TPGR+L ILDE D+ML+
Sbjct: 411 SVIGGAS--REDQGMKLRMGVEVVIATPGRLLDVLENRYLLLNQCTYVILDEADRMLD 466
>Z50071-3|CAA90407.1| 613|Caenorhabditis elegans Hypothetical
protein T07D4.4c protein.
Length = 613
Score = 72.5 bits (170), Expect = 3e-13
Identities = 41/134 (30%), Positives = 75/134 (55%), Gaps = 4/134 (2%)
Frame = +1
Query: 217 SGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLG--MDILCQAKSGMGKTAVFVLA 390
S FR+ LKPE+L+A+ F+ P+ +Q +P ++ +++ QA+SG GKTA FVL
Sbjct: 209 SSFRELRLKPEVLKALDTMNFQFPTRIQETALPLLLMEPPSNLIAQAQSGTGKTAAFVLT 268
Query: 391 TLQQLEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRV--SVFFGGMPIQKDEEV 564
L +++ + + + T ELA QI + E+ K++ +++ ++ G M + ++
Sbjct: 269 MLCRIDVNLMCPQCICLAPTLELAKQIGEVVEKMGKFIDNLKIHYAIKGGNMAAMRGRKL 328
Query: 565 LKTACPHIVVGTPG 606
+ IV+GTPG
Sbjct: 329 TE----QIVIGTPG 338
>Z50071-2|CAA90406.1| 638|Caenorhabditis elegans Hypothetical
protein T07D4.4b protein.
Length = 638
Score = 72.5 bits (170), Expect = 3e-13
Identities = 41/134 (30%), Positives = 75/134 (55%), Gaps = 4/134 (2%)
Frame = +1
Query: 217 SGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLG--MDILCQAKSGMGKTAVFVLA 390
S FR+ LKPE+L+A+ F+ P+ +Q +P ++ +++ QA+SG GKTA FVL
Sbjct: 234 SSFRELRLKPEVLKALDTMNFQFPTRIQETALPLLLMEPPSNLIAQAQSGTGKTAAFVLT 293
Query: 391 TLQQLEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRV--SVFFGGMPIQKDEEV 564
L +++ + + + T ELA QI + E+ K++ +++ ++ G M + ++
Sbjct: 294 MLCRIDVNLMCPQCICLAPTLELAKQIGEVVEKMGKFIDNLKIHYAIKGGNMAAMRGRKL 353
Query: 565 LKTACPHIVVGTPG 606
+ IV+GTPG
Sbjct: 354 TE----QIVIGTPG 363
>Z50071-1|CAA90408.1| 1022|Caenorhabditis elegans Hypothetical protein
T07D4.4a protein.
Length = 1022
Score = 72.5 bits (170), Expect = 3e-13
Identities = 41/134 (30%), Positives = 75/134 (55%), Gaps = 4/134 (2%)
Frame = +1
Query: 217 SGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLG--MDILCQAKSGMGKTAVFVLA 390
S FR+ LKPE+L+A+ F+ P+ +Q +P ++ +++ QA+SG GKTA FVL
Sbjct: 618 SSFRELRLKPEVLKALDTMNFQFPTRIQETALPLLLMEPPSNLIAQAQSGTGKTAAFVLT 677
Query: 391 TLQQLEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRV--SVFFGGMPIQKDEEV 564
L +++ + + + T ELA QI + E+ K++ +++ ++ G M + ++
Sbjct: 678 MLCRIDVNLMCPQCICLAPTLELAKQIGEVVEKMGKFIDNLKIHYAIKGGNMAAMRGRKL 737
Query: 565 LKTACPHIVVGTPG 606
+ IV+GTPG
Sbjct: 738 TE----QIVIGTPG 747
>Z81449-4|CAB03765.1| 811|Caenorhabditis elegans Hypothetical
protein C46F11.4 protein.
Length = 811
Score = 70.9 bits (166), Expect = 8e-13
Identities = 49/163 (30%), Positives = 78/163 (47%), Gaps = 6/163 (3%)
Frame = +1
Query: 223 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATL-- 396
F F ++ AI +E P+ +Q IP A+ G D+L AK+G GKTA ++ +
Sbjct: 267 FAHFSFDKLLMEAIRKSEYEQPTPIQAMAIPSALSGRDVLGIAKTGSGKTAAYLWPAIVH 326
Query: 397 ----QQLEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEV 564
L+ E V V+V+ TRELA Q+ +E ++F K + + + GG ++ E
Sbjct: 327 IMDQPDLKAGEGPVAVIVV-PTRELAIQVFQEAKKFCKVYNINPICAYGGGSKWEQSNE- 384
Query: 565 LKTACPHIVVGTPGRILAXXXXXXXXXXXXXXFILDECDKMLE 693
L+ +VV TPGRI+ + DE D+M +
Sbjct: 385 LQNEGAEMVVCTPGRIIDLVKMGATNFLRTTFLVFDEADRMFD 427
>AF045641-1|AAK68386.1| 970|Caenorhabditis elegans Hypothetical
protein F53H1.1 protein.
Length = 970
Score = 70.5 bits (165), Expect = 1e-12
Identities = 48/148 (32%), Positives = 76/148 (51%), Gaps = 9/148 (6%)
Frame = +1
Query: 277 FEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQ------QLEPSESHVYVLV 438
+ P+ +Q + IP + G D++ AK+G GKT F+L + +LE + + V +
Sbjct: 324 YSKPTSIQAQAIPSIMSGRDVIGIAKTGSGKTLAFLLPMFRHILDQPELEEGDGPIAV-I 382
Query: 439 MCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACPHIVVGTPGR--- 609
+ TRELA Q KE +F+K + G++V+ +GG+ I + LK IVV TPGR
Sbjct: 383 LAPTRELAMQTYKEANKFAKPL-GLKVACTYGGVGISEQIADLKRGA-EIVVCTPGRMID 440
Query: 610 ILAXXXXXXXXXXXXXXFILDECDKMLE 693
+LA +LDE D+M +
Sbjct: 441 VLAANSGKVTNLRRVTYLVLDEADRMFD 468
>U80447-1|AAB37806.1| 746|Caenorhabditis elegans Hypothetical
protein F55F8.2a protein.
Length = 746
Score = 70.1 bits (164), Expect = 1e-12
Identities = 54/161 (33%), Positives = 76/161 (47%), Gaps = 13/161 (8%)
Frame = +1
Query: 175 PKKEVKGSYVSIHSSGFRDFLLKP-EILRAIVDCGFEHPSEVQHECIPQAVLG-MDILCQ 348
PKK K + S ++ F P E+L AI GF P+E+Q +P AV D+L
Sbjct: 140 PKKSKKEASKKTDISAWKQFYFLPNEVLEAIEQMGFSEPTEIQSAVLPAAVRDRQDVLGA 199
Query: 349 AKSGMGKTAVF---VLATL-------QQLEPSESH-VYVLVMCHTRELAFQISKEYERFS 495
A++G GKT F ++A L Q+ E +E L++ TREL QI K
Sbjct: 200 AETGSGKTLAFGIPLVARLLESSDDSQETESTEVRGPRALIVAPTRELVIQIMKHINALI 259
Query: 496 KYMSGVRVSVFFGGMPIQKDEEVLKTACPHIVVGTPGRILA 618
+ S+ GG+ K E ++ P IVV TPGR+ A
Sbjct: 260 STTQLIATSI-VGGLAQVKQERIISQQRPDIVVATPGRLWA 299
>AF079509-1|AAC28388.1| 720|Caenorhabditis elegans germline RNA
helicase-3 protein.
Length = 720
Score = 70.1 bits (164), Expect = 1e-12
Identities = 51/180 (28%), Positives = 85/180 (47%), Gaps = 10/180 (5%)
Frame = +1
Query: 190 KGSYVSIHS-SGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMG 366
+G V+I F D + + R + G+ + +Q +P G DIL A++G G
Sbjct: 288 RGQPVTIQPCKSFSDSDIPQSMRRNVERAGYTRTTPIQQYTLPLVADGKDILACAQTGSG 347
Query: 367 KTAVFVLATLQQL-------EPSESHVY--VLVMCHTRELAFQISKEYERFSKYMSGVRV 519
KTA F+L + +L +E Y +++ TRELA QI E +FS Y S + +
Sbjct: 348 KTAAFLLPIMSRLILEKDLNYGAEGGCYPRCIILTPTRELADQIYNEGRKFS-YQSVMEI 406
Query: 520 SVFFGGMPIQKDEEVLKTACPHIVVGTPGRILAXXXXXXXXXXXXXXFILDECDKMLESL 699
+GG+ + ++ + C I+VGT GR+ +LDE D+M++S+
Sbjct: 407 KPVYGGINVGYNKSQIMKGCT-IIVGTIGRVKHFCEDGAIKLDKCRYLVLDEADRMIDSM 465
>AF003145-4|AAB57719.1| 720|Caenorhabditis elegans Germ-line
helicase protein 3 protein.
Length = 720
Score = 70.1 bits (164), Expect = 1e-12
Identities = 51/180 (28%), Positives = 85/180 (47%), Gaps = 10/180 (5%)
Frame = +1
Query: 190 KGSYVSIHS-SGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMG 366
+G V+I F D + + R + G+ + +Q +P G DIL A++G G
Sbjct: 288 RGQPVTIQPCKSFSDSDIPQSMRRNVERAGYTRTTPIQQYTLPLVADGKDILACAQTGSG 347
Query: 367 KTAVFVLATLQQL-------EPSESHVY--VLVMCHTRELAFQISKEYERFSKYMSGVRV 519
KTA F+L + +L +E Y +++ TRELA QI E +FS Y S + +
Sbjct: 348 KTAAFLLPIMSRLILEKDLNYGAEGGCYPRCIILTPTRELADQIYNEGRKFS-YQSVMEI 406
Query: 520 SVFFGGMPIQKDEEVLKTACPHIVVGTPGRILAXXXXXXXXXXXXXXFILDECDKMLESL 699
+GG+ + ++ + C I+VGT GR+ +LDE D+M++S+
Sbjct: 407 KPVYGGINVGYNKSQIMKGCT-IIVGTIGRVKHFCEDGAIKLDKCRYLVLDEADRMIDSM 465
>AC024859-14|AAY43989.1| 643|Caenorhabditis elegans Hypothetical
protein Y71H2AM.19 protein.
Length = 643
Score = 70.1 bits (164), Expect = 1e-12
Identities = 56/187 (29%), Positives = 85/187 (45%), Gaps = 17/187 (9%)
Frame = +1
Query: 184 EVKGSYVSIHSSGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGM 363
E G V S F D L I I G++ P+ VQ IP G D++ A++G
Sbjct: 155 EATGDDVPQPISLFSDLSLHEWIEENIKTAGYDRPTPVQKYSIPALQGGRDLMSCAQTGS 214
Query: 364 GKTAVFVLATLQQL---EPSESHVYV-------------LVMCHTRELAFQISKEYERFS 495
GKTA F++ + + P H V LV+ TREL+ QI E +F+
Sbjct: 215 GKTAAFLVPLVNAILQDGPDAVHRSVTSSGGRKKQYPSALVLSPTRELSLQIFNESRKFA 274
Query: 496 KYMSGVRVSVFFGGMPIQKDE-EVLKTACPHIVVGTPGRILAXXXXXXXXXXXXXXFILD 672
Y + + ++ +GG KD+ L+ C HI++ TPGR++ +LD
Sbjct: 275 -YRTPITSALLYGGRENYKDQIHKLRLGC-HILIATPGRLIDVMDQGLIGMEGCRYLVLD 332
Query: 673 ECDKMLE 693
E D+ML+
Sbjct: 333 EADRMLD 339
>U13876-12|AAA21169.1| 363|Caenorhabditis elegans Hypothetical
protein F57B9.3 protein.
Length = 363
Score = 66.5 bits (155), Expect = 2e-11
Identities = 40/151 (26%), Positives = 73/151 (48%)
Frame = +1
Query: 238 LKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLEPSE 417
LK E+LR I GFE PS +Q + G D+ Q+++G GKT + ++ LQ ++ +
Sbjct: 3 LKEELLRGIYGFGFEKPSAIQKSAVAPCTTGKDVTIQSQAGSGKTVISLIDILQGIDCED 62
Query: 418 SHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACPHIVVG 597
+H+ V+++ R +A + +E+ + V+ G + + + H+++G
Sbjct: 63 AHLQVILLAPQRGMA---QRAHEQLKSLGRNLNVNATCLGFDTTAENDKIS----HVLMG 115
Query: 598 TPGRILAXXXXXXXXXXXXXXFILDECDKML 690
TP L+ F+LDE D+ML
Sbjct: 116 TPKDFLS---NIPSDTSRIKMFVLDEADEML 143
>U62772-1|AAB04136.1| 763|Caenorhabditis elegans RNA helicase
protein.
Length = 763
Score = 64.5 bits (150), Expect = 7e-11
Identities = 44/168 (26%), Positives = 80/168 (47%), Gaps = 9/168 (5%)
Frame = +1
Query: 223 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 402
F + L + + + G+ + +Q +P G DI+ A++G GKTA F+L + +
Sbjct: 343 FAEANLTETMQKNVAHAGYSKTTPIQQYALPLVHQGYDIMACAQTGSGKTAAFLLPIMTR 402
Query: 403 L-------EPSESHVY--VLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKD 555
L E Y +++ TRELA QI E +F+ Y + + + +GG+ + +
Sbjct: 403 LIDDNNLNTAGEGGCYPRCIILTPTRELADQIYNEGRKFA-YQTMMEIKPVYGGLAVGYN 461
Query: 556 EEVLKTACPHIVVGTPGRILAXXXXXXXXXXXXXXFILDECDKMLESL 699
+ ++ I+VGT GRI F+LDE D+M++++
Sbjct: 462 KGQIEKGAT-IIVGTVGRIKHFCEEGTIKLDKCRFFVLDEADRMIDAM 508
>L19948-1|AAC27384.1| 763|Caenorhabditis elegans RNA helicase
protein.
Length = 763
Score = 64.5 bits (150), Expect = 7e-11
Identities = 44/168 (26%), Positives = 80/168 (47%), Gaps = 9/168 (5%)
Frame = +1
Query: 223 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 402
F + L + + + G+ + +Q +P G DI+ A++G GKTA F+L + +
Sbjct: 343 FAEANLTETMQKNVAHAGYSKTTPIQQYALPLVHQGYDIMACAQTGSGKTAAFLLPIMTR 402
Query: 403 L-------EPSESHVY--VLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKD 555
L E Y +++ TRELA QI E +F+ Y + + + +GG+ + +
Sbjct: 403 LIDDNNLNTAGEGGCYPRCIILTPTRELADQIYNEGRKFA-YQTMMEIKPVYGGLAVGYN 461
Query: 556 EEVLKTACPHIVVGTPGRILAXXXXXXXXXXXXXXFILDECDKMLESL 699
+ ++ I+VGT GRI F+LDE D+M++++
Sbjct: 462 KGQIEKGAT-IIVGTVGRIKHFCEEGTIKLDKCRFFVLDEADRMIDAM 508
>AF000197-1|AAB52901.2| 763|Caenorhabditis elegans Germ-line
helicase protein 1 protein.
Length = 763
Score = 64.5 bits (150), Expect = 7e-11
Identities = 44/168 (26%), Positives = 80/168 (47%), Gaps = 9/168 (5%)
Frame = +1
Query: 223 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 402
F + L + + + G+ + +Q +P G DI+ A++G GKTA F+L + +
Sbjct: 343 FAEANLTETMQKNVAHAGYSKTTPIQQYALPLVHQGYDIMACAQTGSGKTAAFLLPIMTR 402
Query: 403 L-------EPSESHVY--VLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKD 555
L E Y +++ TRELA QI E +F+ Y + + + +GG+ + +
Sbjct: 403 LIDDNNLNTAGEGGCYPRCIILTPTRELADQIYNEGRKFA-YQTMMEIKPVYGGLAVGYN 461
Query: 556 EEVLKTACPHIVVGTPGRILAXXXXXXXXXXXXXXFILDECDKMLESL 699
+ ++ I+VGT GRI F+LDE D+M++++
Sbjct: 462 KGQIEKGAT-IIVGTVGRIKHFCEEGTIKLDKCRFFVLDEADRMIDAM 508
>AL034488-3|CAA22456.1| 504|Caenorhabditis elegans Hypothetical
protein Y54G11A.3 protein.
Length = 504
Score = 63.7 bits (148), Expect = 1e-10
Identities = 47/151 (31%), Positives = 72/151 (47%), Gaps = 11/151 (7%)
Frame = +1
Query: 274 GFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVL-------ATLQQLEPSESH--- 423
GFE PS +Q + P + G D + +++G GKT F+L A L Q E ++
Sbjct: 103 GFEKPSPIQSQMWPLLLSGQDCIGVSQTGSGKTLAFLLPALLHIDAQLAQYEKNDEEQKP 162
Query: 424 -VYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACPHIVVGT 600
+VLV+ TRELA QI E +++S +G + +GG + E + IV+ T
Sbjct: 163 SPFVLVLSPTRELAQQIEGEVKKYS--YNGYKSVCLYGGGSRPEQVEACRGGV-EIVIAT 219
Query: 601 PGRILAXXXXXXXXXXXXXXFILDECDKMLE 693
PGR+ +LDE D+ML+
Sbjct: 220 PGRLTDLSNDGVISLASVTYVVLDEADRMLD 250
>Z81555-7|CAB04518.1| 561|Caenorhabditis elegans Hypothetical
protein F58E10.3a protein.
Length = 561
Score = 62.1 bits (144), Expect = 4e-10
Identities = 47/145 (32%), Positives = 70/145 (48%), Gaps = 6/145 (4%)
Frame = +1
Query: 277 FEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLEPSESH------VYVLV 438
F+ P+ +Q P A+ G DI+ AK+G GKT F+L L + ++H VLV
Sbjct: 149 FQKPTVIQSISWPIAMSGRDIISIAKTGSGKTLAFMLPALVHI-TKQAHRQRGEGPAVLV 207
Query: 439 MCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACPHIVVGTPGRILA 618
+ TRELA Q+ + F + G++++ FGG L+ IVV TPGR+L
Sbjct: 208 LLPTRELAQQVQEVSIDFC-HSLGLKMTCLFGGASKGPQARDLERGV-DIVVATPGRLLD 265
Query: 619 XXXXXXXXXXXXXXFILDECDKMLE 693
+LDE D+ML+
Sbjct: 266 FLDNGTTNMKKCSYLVLDEADRMLD 290
>U60449-1|AAB03510.1| 974|Caenorhabditis elegans GLH-2 protein.
Length = 974
Score = 60.5 bits (140), Expect = 1e-09
Identities = 43/168 (25%), Positives = 79/168 (47%), Gaps = 9/168 (5%)
Frame = +1
Query: 223 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 402
F + L + + + G+ + +Q +P G DI+ A++G GKTA F+L + +
Sbjct: 554 FSEANLGETMKKNVAHAGYTKTTPIQQYTLPLIHQGHDIMACAQTGSGKTAAFLLPIMAR 613
Query: 403 L-------EPSESHVY--VLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKD 555
L E Y +++ TREL QI E +F+ Y + + + +GG+ + +
Sbjct: 614 LIDENDLNTAGEGGCYPRCIILTPTRELTDQIYNEGRKFA-YQTMMEIRPVYGGLAVGYN 672
Query: 556 EEVLKTACPHIVVGTPGRILAXXXXXXXXXXXXXXFILDECDKMLESL 699
+ ++ I+VGT GRI F+LDE D+M++++
Sbjct: 673 KGQIEKGAT-IIVGTVGRIKHFCEEGTIKLDKCRFFVLDEADRMIDAM 719
>U60194-1|AAB03337.1| 974|Caenorhabditis elegans RNA helicase GLH-2
protein.
Length = 974
Score = 60.5 bits (140), Expect = 1e-09
Identities = 43/168 (25%), Positives = 79/168 (47%), Gaps = 9/168 (5%)
Frame = +1
Query: 223 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 402
F + L + + + G+ + +Q +P G DI+ A++G GKTA F+L + +
Sbjct: 554 FSEANLGETMKKNVAHAGYTKTTPIQQYTLPLIHQGHDIMACAQTGSGKTAAFLLPIMAR 613
Query: 403 L-------EPSESHVY--VLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKD 555
L E Y +++ TREL QI E +F+ Y + + + +GG+ + +
Sbjct: 614 LIDENDLNTAGEGGCYPRCIILTPTRELTDQIYNEGRKFA-YQTMMEIRPVYGGLAVGYN 672
Query: 556 EEVLKTACPHIVVGTPGRILAXXXXXXXXXXXXXXFILDECDKMLESL 699
+ ++ I+VGT GRI F+LDE D+M++++
Sbjct: 673 KGQIEKGAT-IIVGTVGRIKHFCEEGTIKLDKCRFFVLDEADRMIDAM 719
>AC006625-11|AAK68269.1| 974|Caenorhabditis elegans Germ-line
helicase protein 2 protein.
Length = 974
Score = 60.5 bits (140), Expect = 1e-09
Identities = 43/168 (25%), Positives = 79/168 (47%), Gaps = 9/168 (5%)
Frame = +1
Query: 223 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 402
F + L + + + G+ + +Q +P G DI+ A++G GKTA F+L + +
Sbjct: 554 FSEANLGETMKKNVAHAGYTKTTPIQQYTLPLIHQGHDIMACAQTGSGKTAAFLLPIMAR 613
Query: 403 L-------EPSESHVY--VLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKD 555
L E Y +++ TREL QI E +F+ Y + + + +GG+ + +
Sbjct: 614 LIDENDLNTAGEGGCYPRCIILTPTRELTDQIYNEGRKFA-YQTMMEIRPVYGGLAVGYN 672
Query: 556 EEVLKTACPHIVVGTPGRILAXXXXXXXXXXXXXXFILDECDKMLESL 699
+ ++ I+VGT GRI F+LDE D+M++++
Sbjct: 673 KGQIEKGAT-IIVGTVGRIKHFCEEGTIKLDKCRFFVLDEADRMIDAM 719
>AC024753-1|AAF60456.1| 732|Caenorhabditis elegans Hypothetical
protein Y23H5B.6 protein.
Length = 732
Score = 60.1 bits (139), Expect = 2e-09
Identities = 46/162 (28%), Positives = 74/162 (45%), Gaps = 5/162 (3%)
Frame = +1
Query: 223 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 402
F DF L L + D + P+E+Q + I ++ G D++ AK+G GKT V+ L+
Sbjct: 78 FEDFPLSWRTLEGLKDNDYTKPTEIQRDTIAYSLTGSDVVGAAKTGSGKTLALVIPVLEA 137
Query: 403 LEPSE-SHVY---VLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLK 570
L ++ S Y L++ TRELA Q + G + GG + + +
Sbjct: 138 LWRAKWSPDYGLGALIISPTRELALQTFSTINAVGAH-HGFSCGLVIGGSDVAFERN--R 194
Query: 571 TACPHIVVGTPGRILA-XXXXXXXXXXXXXXFILDECDKMLE 693
+ +I+V TPGR+L +LDE D+ML+
Sbjct: 195 ISGINIIVCTPGRLLQHMDENAQMSCDSLQVLVLDEADRMLD 236
>AF025451-3|AAB71200.2| 634|Caenorhabditis elegans Hypothetical
protein C24H12.4a protein.
Length = 634
Score = 58.0 bits (134), Expect = 6e-09
Identities = 44/163 (26%), Positives = 81/163 (49%), Gaps = 7/163 (4%)
Frame = +1
Query: 223 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 402
F DF L IL++I + G+E ++VQ I A+ +I+ +A++G GKT F++ +Q+
Sbjct: 91 FADFGLDERILKSIGELGWEKANQVQESVISLALENKNIMGRARTGSGKTGAFLIPLVQK 150
Query: 403 L----EPSESHV--YVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDE-E 561
L + ++ V +++ T+EL QI K + + S+ + ++ I ++E
Sbjct: 151 LIAESKTNDGSVGPSAVIIAPTKELITQIYKLFVKLSQALPFLQA---INLCDINEEENS 207
Query: 562 VLKTACPHIVVGTPGRILAXXXXXXXXXXXXXXFILDECDKML 690
V H+VV TPG++L ++DE D +L
Sbjct: 208 VWLEDRSHVVVTTPGKLLRMCSLRPEYCTLVSYLVMDEADLLL 250
>AF067608-1|AAC17654.2| 544|Caenorhabditis elegans Hypothetical
protein B0511.6 protein.
Length = 544
Score = 55.6 bits (128), Expect = 3e-08
Identities = 43/155 (27%), Positives = 74/155 (47%), Gaps = 7/155 (4%)
Frame = +1
Query: 250 ILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLE----PSE 417
+L+A+ GF +E+Q + I + G D+L AK+G GKT F+L ++ L
Sbjct: 79 LLKAVQGLGFTTMTEIQAKSIDPLLEGKDVLASAKTGSGKTLAFLLPAIELLHKLNWKQH 138
Query: 418 SHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVS--VFFGGMPIQKDEEVLKTACPHIV 591
+ V+++ TREL+ Q Y S+ + G ++ + GG +++ L I+
Sbjct: 139 NGTGVIIVSPTRELSMQ---TYGVLSELLEGSNLTYGLVMGGSNRSAEKDKLAKGV-SIL 194
Query: 592 VGTPGRIL-AXXXXXXXXXXXXXXFILDECDKMLE 693
V TPGR+L I+DE D++L+
Sbjct: 195 VATPGRLLDHLQNTDNFLVRNMKCLIIDEADRILD 229
>Z81094-7|CAB03153.2| 960|Caenorhabditis elegans Hypothetical
protein F58G11.2 protein.
Length = 960
Score = 54.8 bits (126), Expect = 6e-08
Identities = 41/182 (22%), Positives = 80/182 (43%), Gaps = 10/182 (5%)
Frame = +1
Query: 184 EVKGSYVSIHSSGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGM 363
E++ + + + + + L P IL + + + +Q IPQ + G D+L QA++
Sbjct: 370 EIRNAEKDVRLTSWTNSGLHPTILETLKRIKYNNVRTIQGAMIPQVLDGHDVLGQAETSA 429
Query: 364 GKTAVFVLATLQQLEPSESHV----------YVLVMCHTRELAFQISKEYERFSKYMSGV 513
GKTA F L + ++ + L++ TRELA QI + + + + +
Sbjct: 430 GKTAAFGLPIIDKILRMDEETRNKARQDDGPLALILAPTRELAAQIHEALRTYCQ-NTDI 488
Query: 514 RVSVFFGGMPIQKDEEVLKTACPHIVVGTPGRILAXXXXXXXXXXXXXXFILDECDKMLE 693
V + +G + ++ C I++GT GRI+ + DE D++L+
Sbjct: 489 IVLLSYGQSDRARSLNEIRNGC-DILIGTCGRIMDFTVKSHISLLHLRFLVFDEADRLLQ 547
Query: 694 SL 699
+
Sbjct: 548 DM 549
>AC006665-5|AAF39907.1| 630|Caenorhabditis elegans Hypothetical
protein H27M09.1 protein.
Length = 630
Score = 54.8 bits (126), Expect = 6e-08
Identities = 44/153 (28%), Positives = 72/153 (47%), Gaps = 13/153 (8%)
Frame = +1
Query: 274 GFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLEPSESHV--------Y 429
G P+ +Q + IP A+ G D++ A +G GKT FVL + E + +
Sbjct: 209 GIVTPTAIQIQGIPVALSGRDMIGIASTGSGKTMTFVLPLVMFCLEQEMKLPFMRSEGPF 268
Query: 430 VLVMCHTRELAFQ----ISKEYERFSKY-MSGVRVSVFFGGMPIQKDEEVLKTACPHIVV 594
L++ +RELA Q I + ++ K + +R + GG+PI + + ++ HIVV
Sbjct: 269 GLIIVPSRELARQIFDLIIEMFDALGKAGLPEMRAGLCIGGVPIGEQAKDVRDGI-HIVV 327
Query: 595 GTPGRILAXXXXXXXXXXXXXXFILDECDKMLE 693
TPGR+ +LDE D+ML+
Sbjct: 328 ATPGRLSDMLTKKIINLEVCRYLVLDEADRMLD 360
>U80447-2|AAO38637.1| 579|Caenorhabditis elegans Hypothetical
protein F55F8.2b protein.
Length = 579
Score = 54.0 bits (124), Expect = 1e-07
Identities = 42/126 (33%), Positives = 60/126 (47%), Gaps = 12/126 (9%)
Frame = +1
Query: 277 FEHPSEVQHECIPQAVLG-MDILCQAKSGMGKTAVF---VLATL-------QQLEPSESH 423
F P+E+Q +P AV D+L A++G GKT F ++A L Q+ E +E
Sbjct: 8 FSEPTEIQSAVLPAAVRDRQDVLGAAETGSGKTLAFGIPLVARLLESSDDSQETESTEVR 67
Query: 424 -VYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACPHIVVGT 600
L++ TREL QI K + S+ GG+ K E ++ P IVV T
Sbjct: 68 GPRALIVAPTRELVIQIMKHINALISTTQLIATSIV-GGLAQVKQERIISQQRPDIVVAT 126
Query: 601 PGRILA 618
PGR+ A
Sbjct: 127 PGRLWA 132
>Z22177-1|CAA80151.1| 578|Caenorhabditis elegans Hypothetical
protein ZK512.2 protein.
Length = 578
Score = 50.8 bits (116), Expect = 9e-07
Identities = 33/128 (25%), Positives = 69/128 (53%), Gaps = 3/128 (2%)
Frame = +1
Query: 238 LKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLEPSE 417
L PE+L + D ++ ++VQ + D++ ++ +G GKT FVL ++ ++ ++
Sbjct: 17 LGPELLE-VFDKSYKSFTDVQVLSGTHLLNLSDVVVESPTGSGKTLAFVLPMMRMIQNAK 75
Query: 418 ---SHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACPHI 588
+ + L++ +REL QI + F++ ++ + V GG + K+ ++ K +I
Sbjct: 76 LQPADIGALILSPSRELCSQIVSVIQPFAEKLN-LTVETVTGGQKVDKNIKMFKNKNVNI 134
Query: 589 VVGTPGRI 612
+V TPGR+
Sbjct: 135 LVATPGRL 142
>AF079508-1|AAC28387.1| 1156|Caenorhabditis elegans germline RNA
helicase-4 protein.
Length = 1156
Score = 41.5 bits (93), Expect = 6e-04
Identities = 36/150 (24%), Positives = 66/150 (44%), Gaps = 11/150 (7%)
Frame = +1
Query: 286 PSEVQHECIPQAVLGMDILCQAKSGMGKTAVF----VLATLQQLEPSESHV------YVL 435
P+ +Q + G D++ A +G GKT F V+ +++ E +L
Sbjct: 759 PTPIQRASFFPIMHGNDVVACAHTGSGKTLAFLIPFVIKLMEEFEKDRDVTDEKPSPRLL 818
Query: 436 VMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACP-HIVVGTPGRI 612
++ TREL Q + + Y +G++ + FGG + + L++ +I+V T GR+
Sbjct: 819 IVAPTRELVNQTFTTARQLT-YETGLKCGLAFGGYSRNANVQHLRSFSQLNILVATMGRL 877
Query: 613 LAXXXXXXXXXXXXXXFILDECDKMLESLD 702
+LDE D+M++S D
Sbjct: 878 QDFVNAGEVSLSKMKYIVLDEADRMVDSND 907
>AF039718-2|AAB96745.2| 1156|Caenorhabditis elegans Germ-line helicase
protein 4 protein.
Length = 1156
Score = 41.5 bits (93), Expect = 6e-04
Identities = 36/150 (24%), Positives = 66/150 (44%), Gaps = 11/150 (7%)
Frame = +1
Query: 286 PSEVQHECIPQAVLGMDILCQAKSGMGKTAVF----VLATLQQLEPSESHV------YVL 435
P+ +Q + G D++ A +G GKT F V+ +++ E +L
Sbjct: 759 PTPIQRASFFPIMHGNDVVACAHTGSGKTLAFLIPFVIKLMEEFEKDRDVTDEKPSPRLL 818
Query: 436 VMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACP-HIVVGTPGRI 612
++ TREL Q + + Y +G++ + FGG + + L++ +I+V T GR+
Sbjct: 819 IVAPTRELVNQTFTTARQLT-YETGLKCGLAFGGYSRNANVQHLRSFSQLNILVATMGRL 877
Query: 613 LAXXXXXXXXXXXXXXFILDECDKMLESLD 702
+LDE D+M++S D
Sbjct: 878 QDFVNAGEVSLSKMKYIVLDEADRMVDSND 907
>Z81074-9|CAB03040.1| 223|Caenorhabditis elegans Hypothetical
protein F32B6.4 protein.
Length = 223
Score = 27.9 bits (59), Expect = 7.4
Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Frame = +3
Query: 285 SFRSSTRMHSASRPRYGHTLSSQ--VRYG*DSRVCFGNIAAAGTVREPRL 428
S S+T + A P G +S + G DSR N+ A T+ EP L
Sbjct: 52 SSNSTTELQGAQSPSMGSRVSDSHLLTLGSDSRSVSNNLNIAATMAEPNL 101
>Z81098-2|CAB03182.1| 961|Caenorhabditis elegans Hypothetical
protein K07A12.2 protein.
Length = 961
Score = 27.5 bits (58), Expect = 9.8
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = +1
Query: 505 SGVRVSVFFGGMPIQKDEEVLKTACPHIVVGTPG 606
+G V GG P+ D E L + P++VV PG
Sbjct: 585 TGPLVRFATGGQPVASDIEQLIRSIPNMVVNVPG 618
>AF025451-4|AAL16306.1| 567|Caenorhabditis elegans Hypothetical
protein C24H12.4b protein.
Length = 567
Score = 27.5 bits (58), Expect = 9.8
Identities = 21/87 (24%), Positives = 39/87 (44%), Gaps = 1/87 (1%)
Frame = +1
Query: 433 LVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEE-VLKTACPHIVVGTPGR 609
+++ T+EL QI K + + S+ + ++ I ++E V H+VV TPG+
Sbjct: 100 VIIAPTKELITQIYKLFVKLSQALPFLQA---INLCDINEEENSVWLEDRSHVVVTTPGK 156
Query: 610 ILAXXXXXXXXXXXXXXFILDECDKML 690
+L ++DE D +L
Sbjct: 157 LLRMCSLRPEYCTLVSYLVMDEADLLL 183
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,602,673
Number of Sequences: 27780
Number of extensions: 326920
Number of successful extensions: 875
Number of sequences better than 10.0: 50
Number of HSP's better than 10.0 without gapping: 810
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 832
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1624019012
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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