Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc9j08
(692 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC6B12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 47 3e-06
SPAC23A1.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 38 0.002
SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 34 0.017
SPBC3D6.11c |slx8||ubiquitin-protein ligase E3 Slx8 |Schizosacch... 31 0.12
SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family |Schizos... 31 0.16
SPBP8B7.23 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p... 30 0.28
SPBC17A3.10 |pas4||peroxisomal ubiquitin-protein ligase E3 |Schi... 30 0.36
SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces pomb... 29 0.48
SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 29 0.64
SPAPB17E12.03 |||ubiquitin-protein ligase E3 |Schizosaccharomyce... 29 0.84
SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3 |Sch... 28 1.5
SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces pom... 27 1.9
SPCC126.07c |||human CTD-binding SR-like protein rA9 homolog|Sch... 27 2.6
SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog Chs2|Schiz... 27 3.4
SPCC553.06 |||oligosaccharyltransferase subunit|Schizosaccharomy... 26 4.5
SPCC777.13 |vps35||retromer complex subunit Vps35|Schizosaccharo... 26 5.9
SPBC26H8.13c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 25 7.9
>SPAC6B12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 456
Score = 46.8 bits (106), Expect = 3e-06
Identities = 18/40 (45%), Positives = 24/40 (60%)
Frame = +2
Query: 413 CACCSNKPVLPHTMGCSHIFCYYCLVANKTMDQDYACPKC 532
CA CSN P +GCSH+FC +CL+ + D+ CP C
Sbjct: 360 CAICSNVAYKPVRLGCSHVFCLHCLIILQKQKVDF-CPLC 398
>SPAC23A1.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 251
Score = 37.5 bits (83), Expect = 0.002
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = +2
Query: 443 PHTMGCSHIFCYYCLVANKTMDQDYACPKCYH 538
P+T C H +CY C+++ + + +CP C H
Sbjct: 208 PYTTDCGHTYCYACIMSRLKLVNNVSCPICKH 239
>SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 468
Score = 34.3 bits (75), Expect = 0.017
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = +2
Query: 413 CACCSNKPVLPHTMGCSHIFCYYCLVANKTMDQDYACPKC 532
C C+ P T C H +CY CL+ + + +CP C
Sbjct: 85 CPICTEALQRPFTTHCGHTYCYECLL--NWLKESKSCPTC 122
>SPBC3D6.11c |slx8||ubiquitin-protein ligase E3 Slx8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 269
Score = 31.5 bits (68), Expect = 0.12
Identities = 14/41 (34%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
Frame = +2
Query: 413 CACCSNKPVLPHTMGCSHIFCYYCLV-ANKTMDQDYACPKC 532
C C + P C HIFC +C++ A T CP C
Sbjct: 206 CVICLDSPENLSCTPCGHIFCNFCILSALGTTAATQKCPVC 246
>SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 482
Score = 31.1 bits (67), Expect = 0.16
Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Frame = +2
Query: 389 PNMTLS-TVCACCSNKPVLPHTMGCSHIFCYYCLVANKTMDQDYACPKCY 535
PN++L+ T+C + T C +FC C + +D D+ CP C+
Sbjct: 276 PNISLACTLCKKLARNAC--RTPCCDKLFCEEC-IQTALLDSDFECPNCH 322
>SPBP8B7.23 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 673
Score = 30.3 bits (65), Expect = 0.28
Identities = 9/24 (37%), Positives = 13/24 (54%)
Frame = +2
Query: 419 CCSNKPVLPHTMGCSHIFCYYCLV 490
C KPV C H++C+ CL+
Sbjct: 217 CLEEKPVAARMSRCGHVYCFSCLL 240
>SPBC17A3.10 |pas4||peroxisomal ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 306
Score = 29.9 bits (64), Expect = 0.36
Identities = 13/40 (32%), Positives = 17/40 (42%)
Frame = +2
Query: 413 CACCSNKPVLPHTMGCSHIFCYYCLVANKTMDQDYACPKC 532
C+ C P C HIFC+ C+ N + CP C
Sbjct: 256 CSLCMEFIHCPAATECGHIFCWSCI--NGWTSKKSECPLC 293
>SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 387
Score = 29.5 bits (63), Expect = 0.48
Identities = 14/51 (27%), Positives = 19/51 (37%)
Frame = +2
Query: 380 PGAPNMTLSTVCACCSNKPVLPHTMGCSHIFCYYCLVANKTMDQDYACPKC 532
P + S C C P CSH FC +C+ + + CP C
Sbjct: 18 PSLKGLDSSLRCLICHEYFRAPLITSCSHTFCSFCI--RDYLREHPMCPAC 66
>SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 486
Score = 29.1 bits (62), Expect = 0.64
Identities = 14/47 (29%), Positives = 19/47 (40%)
Frame = +2
Query: 392 NMTLSTVCACCSNKPVLPHTMGCSHIFCYYCLVANKTMDQDYACPKC 532
N++ C C P C H FC CL+ + + Q CP C
Sbjct: 162 NVSRELECQICFGMLYDPVVSPCGHTFCGPCLM--QALTQSPQCPTC 206
>SPAPB17E12.03 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 311
Score = 28.7 bits (61), Expect = 0.84
Identities = 9/32 (28%), Positives = 16/32 (50%)
Frame = +2
Query: 392 NMTLSTVCACCSNKPVLPHTMGCSHIFCYYCL 487
N++ + +C C K P + +FCY C+
Sbjct: 250 NVSTTDICKICGEKIKNPAVLSTGFVFCYPCI 281
>SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1133
Score = 27.9 bits (59), Expect = 1.5
Identities = 12/30 (40%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Frame = +2
Query: 401 LSTVCACCSNKPVL-PHTMGCSHIFCYYCL 487
L T C C N+P+ P + C H C CL
Sbjct: 873 LITECPICCNEPIQNPLLLNCKHACCGDCL 902
>SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1375
Score = 27.5 bits (58), Expect = 1.9
Identities = 11/41 (26%), Positives = 18/41 (43%)
Frame = +2
Query: 410 VCACCSNKPVLPHTMGCSHIFCYYCLVANKTMDQDYACPKC 532
+C C + C H++C +CL A + +CP C
Sbjct: 1091 ICIICRDIIKQGFITTCGHLYCSFCLEA--WLKHSSSCPMC 1129
>SPCC126.07c |||human CTD-binding SR-like protein rA9
homolog|Schizosaccharomyces pombe|chr 3|||Manual
Length = 571
Score = 27.1 bits (57), Expect = 2.6
Identities = 11/41 (26%), Positives = 18/41 (43%)
Frame = +2
Query: 410 VCACCSNKPVLPHTMGCSHIFCYYCLVANKTMDQDYACPKC 532
+C + VL GC + YCL + +++ CP C
Sbjct: 127 ICGRSDHAEVLLLCDGCDDAYHTYCLNMDAVPIEEFYCPNC 167
>SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog
Chs2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 926
Score = 26.6 bits (56), Expect = 3.4
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = +1
Query: 379 TWSSKYDFEYCVCLLLKQTSIASY 450
TWS+ D + VCL L +AS+
Sbjct: 238 TWSTGRDIQIAVCLTLSDEDLASF 261
>SPCC553.06 |||oligosaccharyltransferase subunit|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 271
Score = 26.2 bits (55), Expect = 4.5
Identities = 13/43 (30%), Positives = 20/43 (46%)
Frame = -3
Query: 375 LNVCTGLFHHTYFKNFESLCFKPIILKSDIPVPKSSSINFVAC 247
+NV L+H F + L K +IL + P PK ++ C
Sbjct: 150 INVPPSLYHKAEFSPLDELSPKEVILHTFSPPPKRANYFLSIC 192
>SPCC777.13 |vps35||retromer complex subunit
Vps35|Schizosaccharomyces pombe|chr 3|||Manual
Length = 785
Score = 25.8 bits (54), Expect = 5.9
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +3
Query: 456 DAVIFFVITVWWQTKLWIKIMHV 524
D+V F VI KLW++I H+
Sbjct: 128 DSVKFLVINFTEMNKLWVRIQHL 150
>SPBC26H8.13c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 124
Score = 25.4 bits (53), Expect = 7.9
Identities = 8/26 (30%), Positives = 11/26 (42%)
Frame = +2
Query: 458 CSHIFCYYCLVANKTMDQDYACPKCY 535
C C C +T + + CP CY
Sbjct: 94 CESNVCSMCSKQERTFESEAFCPSCY 119
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,676,208
Number of Sequences: 5004
Number of extensions: 56601
Number of successful extensions: 143
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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