Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc9j06
         (650 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC337.15c |coq7||ubiquinone biosynthesis protein Coq7|Schizosa...   172   3e-44
SPBC1271.09 |||glycerophosphodiester transporter|Schizosaccharom...    30   0.25 
SPBC3F6.05 |rga1||GTPase activating protein Rga1|Schizosaccharom...    26   4.1  
SPBC18H10.04c |sce3|tif48|translation initiation factor eIF4B|Sc...    26   4.1  
SPBC3D6.04c |mad1||mitotic spindle checkpoint protein Mad1|Schiz...    25   7.2  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    25   7.2  
SPBC24C6.03 |||proline-tRNA ligase |Schizosaccharomyces pombe|ch...    25   9.5  
SPAC1805.03c |trm13||tRNA 2'-O-methyltransferase Trm13 |Schizosa...    25   9.5  

>SPBC337.15c |coq7||ubiquinone biosynthesis protein
           Coq7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 216

 Score =  172 bits (419), Expect = 3e-44
 Identities = 91/173 (52%), Positives = 113/173 (65%), Gaps = 6/173 (3%)
 Frame = +2

Query: 107 LDQIIRVDHAGELGADRIYAGQMAVLGRTAE--GPLIQHMWDQEKKHREKFEQLINEYRV 280
           LD +IRVD AGELGA++IY GQ  +L  T     P IQHMWDQEK H   F+  + + RV
Sbjct: 43  LDSVIRVDQAGELGANQIYKGQHFILQFTDPKVAPTIQHMWDQEKYHLATFDNYVLKNRV 102

Query: 281 RPTVLTPIWNVAGFVLGAGTALLGKEAAMACTVAVETVIVDHYNDQLRTLMQDPNVD--- 451
           RPT L P W++AGF LGAGTALLG +AAMACT AVETVI  HYNDQLR      N     
Sbjct: 103 RPTFLRPFWDIAGFALGAGTALLGTKAAMACTEAVETVIGGHYNDQLRETAHLENKAPEF 162

Query: 452 KEILETITRFRDEEQEHHDAGLQ-HGAEQAPGYRALTELIKAGCRAAIQLSKK 607
           KEI   +  FRD+E EH +  ++   A++AP +  LT  I+ GC+AAI + K+
Sbjct: 163 KEIRSHLAEFRDDELEHLNTAVEGWNAKEAPAHALLTNAIQMGCKAAIWMCKR 215


>SPBC1271.09 |||glycerophosphodiester
           transporter|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 543

 Score = 30.3 bits (65), Expect = 0.25
 Identities = 12/41 (29%), Positives = 27/41 (65%)
 Frame = +2

Query: 386 ETVIVDHYNDQLRTLMQDPNVDKEILETITRFRDEEQEHHD 508
           E+  VD+  D++   + +P+V++ I  ++TR+R +E++  D
Sbjct: 7   ESKYVDNGEDEVVRQVSEPSVEEPIEASVTRYRSDEEKLDD 47


>SPBC3F6.05 |rga1||GTPase activating protein
           Rga1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1150

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 14/53 (26%), Positives = 23/53 (43%)
 Frame = +3

Query: 120 SEWITPVNWARTASTRDKWQSWAAQLKDPSSSTCGTRKRSTGRNLSSSSMSTE 278
           S  +     A T ++ D ++ +A  L D         +++T     SSS STE
Sbjct: 601 SSTVETAKQAETTASSDSFRKYANTLNDLRHLKSSRNRKATSNETQSSSNSTE 653


>SPBC18H10.04c |sce3|tif48|translation initiation factor
           eIF4B|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 388

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -3

Query: 366 MAASLPRSAVPAPNTNPATFHIGVSTVGLT 277
           M +   R A+P P+  P T H+G  +  LT
Sbjct: 77  MGSGYQRDAIPIPSEPPFTAHVGNLSFDLT 106


>SPBC3D6.04c |mad1||mitotic spindle checkpoint protein
           Mad1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 689

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = +2

Query: 395 IVDHYNDQLRTLMQDPNVDKEILETITRFRDEEQEHHDAG 514
           +VD Y  +L ++    +VD+   E   + R  + EH DAG
Sbjct: 430 LVDEYKLKLESMPVSLDVDETSDEVSLQKRRRKNEHKDAG 469


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = -3

Query: 390  VSTATVQAMAASLPRSAVPAPNTN 319
            V   + +A + S PRS+VP+P++N
Sbjct: 1239 VPAPSSEAPSVSTPRSSVPSPHSN 1262


>SPBC24C6.03 |||proline-tRNA ligase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 425

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +2

Query: 26  INMRSPLIQHIRLAHSSSRPYWKKN 100
           I+MRS     I LAH SS+  W+K+
Sbjct: 64  ISMRSLGASAISLAHLSSKEIWEKS 88


>SPAC1805.03c |trm13||tRNA 2'-O-methyltransferase Trm13
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 407

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -1

Query: 182 RLPFVPRRCGPRPIHRRDP 126
           RL +  +RC  RP+ R DP
Sbjct: 69  RLEYHLKRCNARPVERTDP 87


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,570,602
Number of Sequences: 5004
Number of extensions: 51404
Number of successful extensions: 169
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)