Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc9j06
(650 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_06_0212 + 26410330-26410419,26410562-26410846,26411005-264112... 35 0.065
05_03_0212 + 10260690-10261272,10261921-10262435,10262446-102625... 33 0.20
01_04_0113 - 16133794-16134933,16135030-16135611,16135698-16135853 31 1.1
06_03_1040 + 27082978-27083086,27083574-27083632,27083759-270838... 30 1.4
01_01_0888 + 6990354-6991862,6991970-6992431 30 1.8
11_06_0017 - 19288171-19288437,19288770-19288989,19291630-19291754 29 2.4
06_01_0623 + 4536817-4536868,4537129-4537328,4537401-4537609,453... 29 4.2
05_03_0002 - 7278527-7279675,7279768-7280325,7280433-7280594 29 4.2
11_03_0010 - 8922361-8922375,8923888-8924610 28 5.6
08_01_0107 - 789217-789984,790070-790219,790303-790890,790968-79... 28 5.6
06_01_0872 + 6687849-6687864,6689622-6690235,6690927-6691478 28 5.6
03_06_0343 + 33274329-33274981,33275197-33276121 28 5.6
11_04_0184 - 14645630-14645905,14645997-14646701 28 7.4
03_06_0169 - 32125193-32125666,32125774-32126148 28 7.4
02_04_0342 - 22163650-22163709,22164137-22164391 28 7.4
07_03_1392 - 26238885-26239007,26239137-26239235,26239636-262397... 27 9.8
01_01_1208 + 9733010-9733114,9733920-9733979,9735254-9736280,973... 27 9.8
01_01_0269 + 2223683-2224060 27 9.8
>05_06_0212 +
26410330-26410419,26410562-26410846,26411005-26411208,
26411636-26411692,26411859-26412926
Length = 567
Score = 34.7 bits (76), Expect = 0.065
Identities = 24/79 (30%), Positives = 35/79 (44%)
Frame = +1
Query: 1 EFNEFDSKDKHAITTDSTHQIGAQQQSTLLEEKSTP*PDNPSGSRR*IGRGPHLRGTNGS 180
E+ E SK+ A+ + + Q L +++P + S + R L +NG
Sbjct: 475 EYPENGSKNSPAVPS---YMAATQSAKAKLRGQNSPRLSSDSAEKNGFTRRHSLPSSNGK 531
Query: 181 LGPHS*RTPHPAHVGPGKE 237
L HS RT P H G GKE
Sbjct: 532 LNSHSPRTQRPTHAG-GKE 549
>05_03_0212 +
10260690-10261272,10261921-10262435,10262446-10262569,
10262840-10263042,10263169-10263240,10264905-10265007,
10265350-10265582
Length = 610
Score = 33.1 bits (72), Expect = 0.20
Identities = 26/84 (30%), Positives = 38/84 (45%), Gaps = 2/84 (2%)
Frame = -3
Query: 465 SRISLSTFGSCISVRSWSL*WSTITVSTATVQAMAASLPRSAVPAPNTNPATFHIGVSTV 286
S S STF + V S ++ +V+ A A+ S V TF + V
Sbjct: 34 SHFSRSTFRLVVDVPRSSFRLTSSSVALALRAAIGGSPSDLHVDPLIDRSFTFLVCSKKV 93
Query: 285 GLTLYSL--MSCSNFSLCFFSWSH 220
GL +YSL SC +FS+ +F W +
Sbjct: 94 GLWIYSLRSFSCKDFSVRYFLWKN 117
>01_04_0113 - 16133794-16134933,16135030-16135611,16135698-16135853
Length = 625
Score = 30.7 bits (66), Expect = 1.1
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -3
Query: 462 RISLSTFGSCISVRSWSL*WSTITVSTAT 376
R +S FG C+ V S ++ W T+ ST T
Sbjct: 264 RFPVSAFGICLGVSSQAILWKTVATSTPT 292
>06_03_1040 +
27082978-27083086,27083574-27083632,27083759-27083833,
27083908-27084024,27084207-27084277,27084432-27084732,
27084949-27085238,27085779-27085833
Length = 358
Score = 30.3 bits (65), Expect = 1.4
Identities = 26/79 (32%), Positives = 36/79 (45%), Gaps = 10/79 (12%)
Frame = +2
Query: 290 VLTPIWNVAGFVL-GAGTALLGKEAAMACTVAVETVIVDHYNDQL---------RTLMQD 439
+LTP W V+ F L G +G + +A VE IVD Y+D +Q+
Sbjct: 51 ILTPKWVVSVFFLVGVIFVPVGVVSLLAAQNVVE--IVDRYDDACVPANMTDNKLAYIQN 108
Query: 440 PNVDKEILETITRFRDEEQ 496
PN+ KE T+T D Q
Sbjct: 109 PNISKECTRTLTITEDMNQ 127
>01_01_0888 + 6990354-6991862,6991970-6992431
Length = 656
Score = 29.9 bits (64), Expect = 1.8
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = -3
Query: 462 RISLSTFGSCISVRSWSL*WSTITVSTAT 376
R +S FG C+ + S ++ W I +ST+T
Sbjct: 264 RFPVSAFGMCMGMSSQAILWKNIAISTST 292
>11_06_0017 - 19288171-19288437,19288770-19288989,19291630-19291754
Length = 203
Score = 29.5 bits (63), Expect = 2.4
Identities = 15/48 (31%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
Frame = +2
Query: 140 ELGADRIYAGQMAVLGRTAEGPLI--QHMWDQEKKHREKFEQLINEYR 277
E+G RI+ + + + E L+ QH ++E+K RE+ E+ + E R
Sbjct: 86 EVGRKRIHEEVLVQIEKEKEAALVEAQHKAERERKEREELEKKLEEER 133
>06_01_0623 +
4536817-4536868,4537129-4537328,4537401-4537609,
4538531-4538954
Length = 294
Score = 28.7 bits (61), Expect = 4.2
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = -3
Query: 480 NLVIVSRISLSTFGSCISVRSWSL*WSTITVST 382
N+ I + +S FG C+ + S + W T+ ST
Sbjct: 106 NVAIPALFPVSAFGICLGMSSQEILWKTVATST 138
>05_03_0002 - 7278527-7279675,7279768-7280325,7280433-7280594
Length = 622
Score = 28.7 bits (61), Expect = 4.2
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = -3
Query: 462 RISLSTFGSCISVRSWSL*WSTITVSTAT 376
R +S FG C+ V S ++ W TI S T
Sbjct: 258 RFPVSAFGMCLGVSSQAILWKTIATSGPT 286
>11_03_0010 - 8922361-8922375,8923888-8924610
Length = 245
Score = 28.3 bits (60), Expect = 5.6
Identities = 17/42 (40%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
Frame = +2
Query: 524 GAEQAPGYRALTELIKAGCRAAIQLSKKI*D--RASRRAGNT 643
GA AP YRAL ++ A +Q S++I D RA+ + G+T
Sbjct: 111 GALTAPDYRALAVILDAYAWKLVQGSRQIADSMRAAEKLGHT 152
>08_01_0107 -
789217-789984,790070-790219,790303-790890,790968-791093
Length = 543
Score = 28.3 bits (60), Expect = 5.6
Identities = 17/51 (33%), Positives = 26/51 (50%)
Frame = +3
Query: 120 SEWITPVNWARTASTRDKWQSWAAQLKDPSSSTCGTRKRSTGRNLSSSSMS 272
S W+T V A + ++D + AA+L+D + G R+R SSS S
Sbjct: 9 SSWLTAVKRAFRSPSKDDSPNKAARLRDDTDDDKGKRERRRWLFRKSSSPS 59
>06_01_0872 + 6687849-6687864,6689622-6690235,6690927-6691478
Length = 393
Score = 28.3 bits (60), Expect = 5.6
Identities = 21/54 (38%), Positives = 28/54 (51%), Gaps = 4/54 (7%)
Frame = +2
Query: 251 FEQLINEYRVRPTVLTPIWNVAGFVLGAGTALL-GKEA---AMACTVAVETVIV 400
+ LIN + ++TPI VLG GTA GK A A A +V+V T +V
Sbjct: 258 YTTLINPFTKFALLITPIAEAIEGVLGLGTATTGGKPAQYRAAAVSVSVRTALV 311
>03_06_0343 + 33274329-33274981,33275197-33276121
Length = 525
Score = 28.3 bits (60), Expect = 5.6
Identities = 11/42 (26%), Positives = 22/42 (52%)
Frame = +2
Query: 389 TVIVDHYNDQLRTLMQDPNVDKEILETITRFRDEEQEHHDAG 514
T +V + TL DP +EI++ + F++ +++H G
Sbjct: 240 TEVVFKHPKTFETLAMDPEKKREIIDDLDMFKNGKEQHRRVG 281
>11_04_0184 - 14645630-14645905,14645997-14646701
Length = 326
Score = 27.9 bits (59), Expect = 7.4
Identities = 13/26 (50%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Frame = -2
Query: 601 GELYGGPAARLDELGERAVAG-GLLG 527
G+ +G PAAR+DE G AG G+ G
Sbjct: 6 GQQHGHPAARVDEYGNPVAAGHGITG 31
>03_06_0169 - 32125193-32125666,32125774-32126148
Length = 282
Score = 27.9 bits (59), Expect = 7.4
Identities = 19/60 (31%), Positives = 26/60 (43%)
Frame = +3
Query: 87 IGRKIHTLTR*SEWITPVNWARTASTRDKWQSWAAQLKDPSSSTCGTRKRSTGRNLSSSS 266
I I LT + W+TP W T S A L++P ST + +N+ SSS
Sbjct: 34 INNNIPGLTNTNSWVTPQGWILVRDT----VSTATFLQNPHDSTDKIQLPHLSQNVHSSS 89
>02_04_0342 - 22163650-22163709,22164137-22164391
Length = 104
Score = 27.9 bits (59), Expect = 7.4
Identities = 15/42 (35%), Positives = 19/42 (45%)
Frame = -3
Query: 381 ATVQAMAASLPRSAVPAPNTNPATFHIGVSTVGLTLYSLMSC 256
ATV AMA + P +AV PA G + + LM C
Sbjct: 52 ATVVAMAVTTPAAAVTTSKARPAATTAGTTMARKLVLLLMCC 93
>07_03_1392 -
26238885-26239007,26239137-26239235,26239636-26239720,
26239825-26240028,26240360-26240682,26241904-26242575
Length = 501
Score = 27.5 bits (58), Expect = 9.8
Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Frame = -1
Query: 188 GPRLPF-VPRRCGPRPIHRRDPLGLSGQG 105
G R+P V RRC PR + RD LG++ G
Sbjct: 96 GMRVPTAVQRRCIPRALEGRDVLGIAETG 124
>01_01_1208 +
9733010-9733114,9733920-9733979,9735254-9736280,
9736332-9736621
Length = 493
Score = 27.5 bits (58), Expect = 9.8
Identities = 16/73 (21%), Positives = 29/73 (39%), Gaps = 1/73 (1%)
Frame = -3
Query: 426 VRSWSL*WSTITVSTATVQAMAASLP-RSAVPAPNTNPATFHIGVSTVGLTLYSLMSCSN 250
V WSL W+++ + AT +M L + +P P + P + + + +
Sbjct: 319 VLPWSLGWNSVALMPATQCSMQPVLGLKDGIPCPPSWPPQLMVPAPGICTPVVPIPLVPP 378
Query: 249 FSLCFFSWSHMCW 211
CF W + W
Sbjct: 379 LWSCFPGWPNGMW 391
>01_01_0269 + 2223683-2224060
Length = 125
Score = 27.5 bits (58), Expect = 9.8
Identities = 13/41 (31%), Positives = 20/41 (48%)
Frame = +3
Query: 162 TRDKWQSWAAQLKDPSSSTCGTRKRSTGRNLSSSSMSTE*D 284
TR SW +L+D S++T RK G + +S + D
Sbjct: 66 TRASLASWTEELRDKSAATDDARKGGEGSGMIETSTKVKND 106
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,610,095
Number of Sequences: 37544
Number of extensions: 415840
Number of successful extensions: 1618
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1564
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1617
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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