Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc9j06
(650 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U13642-9|AAG00035.1| 187|Caenorhabditis elegans Clock (biologic... 200 5e-52
U80846-5|AAP82647.1| 825|Caenorhabditis elegans Hypothetical pr... 30 1.6
U80846-4|AAC70889.1| 1032|Caenorhabditis elegans Hypothetical pr... 30 1.6
U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical pr... 30 1.6
Z81131-1|CAB03423.4| 464|Caenorhabditis elegans Hypothetical pr... 29 2.9
Z81086-7|CAB03118.2| 316|Caenorhabditis elegans Hypothetical pr... 29 3.8
U28739-15|AAK68188.1| 537|Caenorhabditis elegans Hypothetical p... 28 5.0
U28739-14|AAM54207.1| 535|Caenorhabditis elegans Hypothetical p... 28 5.0
Z68337-7|CAA92742.1| 220|Caenorhabditis elegans Hypothetical pr... 28 6.6
U40938-4|AAK68283.1| 447|Caenorhabditis elegans Cyclophilin fam... 28 6.6
U40938-3|AAA81696.1| 466|Caenorhabditis elegans Cyclophilin fam... 28 6.6
U31078-1|AAC47130.1| 466|Caenorhabditis elegans cyclophilin iso... 28 6.6
AL117202-27|CAB57897.1| 579|Caenorhabditis elegans Hypothetical... 28 6.6
AF031843-1|AAC13679.1| 579|Caenorhabditis elegans GLY9 protein. 28 6.6
Z92813-1|CAB07286.1| 393|Caenorhabditis elegans Hypothetical pr... 27 8.7
>U13642-9|AAG00035.1| 187|Caenorhabditis elegans Clock (biological
timing) abnormalityprotein 1 protein.
Length = 187
Score = 200 bits (489), Expect = 5e-52
Identities = 91/169 (53%), Positives = 127/169 (75%), Gaps = 1/169 (0%)
Frame = +2
Query: 107 LDQIIRVDHAGELGADRIYAGQMAVLGRTAEGPLIQHMWDQEKKHREKFEQLINEYRVRP 286
+++IIRVDHAGELGADRIYAGQ+AVL ++ G +I+ MWD+EK+H + E+L ++ V
Sbjct: 19 IEKIIRVDHAGELGADRIYAGQLAVLQGSSVGSVIKKMWDEEKEHLDTMERLAAKHNVPH 78
Query: 287 TVLTPIWNVAGFVLGAGTALLGKEAAMACTVAVETVIVDHYNDQLRTLM-QDPNVDKEIL 463
TV +P+++VA + LG G+ALLGKE AMACT+AVE +I HYNDQL+ L+ DP KE+L
Sbjct: 79 TVFSPVFSVAAYALGVGSALLGKEGAMACTIAVEELIGQHYNDQLKELLADDPETHKELL 138
Query: 464 ETITRFRDEEQEHHDAGLQHGAEQAPGYRALTELIKAGCRAAIQLSKKI 610
+ +TR RDEE HHD G++H +AP Y AL +I+ GC+ AI +++KI
Sbjct: 139 KILTRLRDEELHHHDTGVEHDGMKAPAYSALKWIIQTGCKGAIAIAEKI 187
>U80846-5|AAP82647.1| 825|Caenorhabditis elegans Hypothetical
protein K06A9.1c protein.
Length = 825
Score = 29.9 bits (64), Expect = 1.6
Identities = 17/51 (33%), Positives = 27/51 (52%)
Frame = -3
Query: 474 VIVSRISLSTFGSCISVRSWSL*WSTITVSTATVQAMAASLPRSAVPAPNT 322
V V+ +S STFGS + S S ST+TV + + +S P ++ + T
Sbjct: 214 VTVAPVSSSTFGSSTPIASSSSSGSTVTVVSGSSSTYGSSTPSASSSSAGT 264
>U80846-4|AAC70889.1| 1032|Caenorhabditis elegans Hypothetical
protein K06A9.1a protein.
Length = 1032
Score = 29.9 bits (64), Expect = 1.6
Identities = 17/51 (33%), Positives = 27/51 (52%)
Frame = -3
Query: 474 VIVSRISLSTFGSCISVRSWSL*WSTITVSTATVQAMAASLPRSAVPAPNT 322
V V+ +S STFGS + S S ST+TV + + +S P ++ + T
Sbjct: 421 VTVAPVSSSTFGSSTPIASSSSSGSTVTVVSGSSSTYGSSTPSASSSSAGT 471
>U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical
protein K06A9.1b protein.
Length = 2232
Score = 29.9 bits (64), Expect = 1.6
Identities = 17/51 (33%), Positives = 27/51 (52%)
Frame = -3
Query: 474 VIVSRISLSTFGSCISVRSWSL*WSTITVSTATVQAMAASLPRSAVPAPNT 322
V V+ +S STFGS + S S ST+TV + + +S P ++ + T
Sbjct: 421 VTVAPVSSSTFGSSTPIASSSSSGSTVTVVSGSSSTYGSSTPSASSSSAGT 471
>Z81131-1|CAB03423.4| 464|Caenorhabditis elegans Hypothetical
protein T24D1.2 protein.
Length = 464
Score = 29.1 bits (62), Expect = 2.9
Identities = 18/54 (33%), Positives = 24/54 (44%)
Frame = +1
Query: 7 NEFDSKDKHAITTDSTHQIGAQQQSTLLEEKSTP*PDNPSGSRR*IGRGPHLRG 168
NE + + IT S+ + + EE+ P NP GS GRGP RG
Sbjct: 176 NEEEEERNATITISSSESDADSEAESDHEERDMPRAFNPRGSYARSGRGPGGRG 229
>Z81086-7|CAB03118.2| 316|Caenorhabditis elegans Hypothetical
protein F53B6.7 protein.
Length = 316
Score = 28.7 bits (61), Expect = 3.8
Identities = 12/41 (29%), Positives = 19/41 (46%)
Frame = -3
Query: 306 HIGVSTVGLTLYSLMSCSNFSLCFFSWSHMCWMRGPSAVRP 184
HI LT+ ++ + L F +W +C+ RGP P
Sbjct: 45 HIDQPGRELTIVAMSHAESMGLIFPNWVRVCYRRGPMEYHP 85
>U28739-15|AAK68188.1| 537|Caenorhabditis elegans Hypothetical
protein C17G10.9a protein.
Length = 537
Score = 28.3 bits (60), Expect = 5.0
Identities = 11/40 (27%), Positives = 20/40 (50%)
Frame = +2
Query: 188 RTAEGPLIQHMWDQEKKHREKFEQLINEYRVRPTVLTPIW 307
R GPL+ H ++ ++E F +L++ P L +W
Sbjct: 108 RNTRGPLLVHRYESFMNYQELFSELLSSKDPIPLSLPNVW 147
>U28739-14|AAM54207.1| 535|Caenorhabditis elegans Hypothetical
protein C17G10.9b protein.
Length = 535
Score = 28.3 bits (60), Expect = 5.0
Identities = 11/40 (27%), Positives = 20/40 (50%)
Frame = +2
Query: 188 RTAEGPLIQHMWDQEKKHREKFEQLINEYRVRPTVLTPIW 307
R GPL+ H ++ ++E F +L++ P L +W
Sbjct: 106 RNTRGPLLVHRYESFMNYQELFSELLSSKDPIPLSLPNVW 145
>Z68337-7|CAA92742.1| 220|Caenorhabditis elegans Hypothetical
protein M7.10 protein.
Length = 220
Score = 27.9 bits (59), Expect = 6.6
Identities = 19/52 (36%), Positives = 23/52 (44%)
Frame = +1
Query: 112 PDNPSGSRR*IGRGPHLRGTNGSLGPHS*RTPHPAHVGPGKEAQGEI*AAHQ 267
P P G RR +GP +G G GPH P V KEA G A+ +
Sbjct: 171 PKGPGGLRR--PKGP--KGPKGPGGPHGKPPGGPKKVSEEKEASGSAQASSE 218
>U40938-4|AAK68283.1| 447|Caenorhabditis elegans Cyclophilin family
protein 8, isoformb protein.
Length = 447
Score = 27.9 bits (59), Expect = 6.6
Identities = 14/42 (33%), Positives = 25/42 (59%)
Frame = +3
Query: 141 NWARTASTRDKWQSWAAQLKDPSSSTCGTRKRSTGRNLSSSS 266
N R S+R ++ ++L++P + + RKRS+ + SSSS
Sbjct: 399 NRRRRRSSRSGSENDESELEEPKNRSASPRKRSSSSSSSSSS 440
>U40938-3|AAA81696.1| 466|Caenorhabditis elegans Cyclophilin family
protein 8, isoforma protein.
Length = 466
Score = 27.9 bits (59), Expect = 6.6
Identities = 14/42 (33%), Positives = 25/42 (59%)
Frame = +3
Query: 141 NWARTASTRDKWQSWAAQLKDPSSSTCGTRKRSTGRNLSSSS 266
N R S+R ++ ++L++P + + RKRS+ + SSSS
Sbjct: 418 NRRRRRSSRSGSENDESELEEPKNRSASPRKRSSSSSSSSSS 459
>U31078-1|AAC47130.1| 466|Caenorhabditis elegans cyclophilin
isoform 8 protein.
Length = 466
Score = 27.9 bits (59), Expect = 6.6
Identities = 14/42 (33%), Positives = 25/42 (59%)
Frame = +3
Query: 141 NWARTASTRDKWQSWAAQLKDPSSSTCGTRKRSTGRNLSSSS 266
N R S+R ++ ++L++P + + RKRS+ + SSSS
Sbjct: 418 NRRRRRSSRSGSENDESELEEPKNRSASPRKRSSSSSSSSSS 459
>AL117202-27|CAB57897.1| 579|Caenorhabditis elegans Hypothetical
protein Y47D3A.23a protein.
Length = 579
Score = 27.9 bits (59), Expect = 6.6
Identities = 16/57 (28%), Positives = 24/57 (42%)
Frame = +2
Query: 374 TVAVETVIVDHYNDQLRTLMQDPNVDKEILETITRFRDEEQEHHDAGLQHGAEQAPG 544
TVA ++ H ND+ RT Q P+++K E + E H + PG
Sbjct: 20 TVAFFCIVAYHRNDRRRTKFQFPDIEKYAEELVRLPETWNGELHQIPNYTAPREGPG 76
>AF031843-1|AAC13679.1| 579|Caenorhabditis elegans GLY9 protein.
Length = 579
Score = 27.9 bits (59), Expect = 6.6
Identities = 16/57 (28%), Positives = 24/57 (42%)
Frame = +2
Query: 374 TVAVETVIVDHYNDQLRTLMQDPNVDKEILETITRFRDEEQEHHDAGLQHGAEQAPG 544
TVA ++ H ND+ RT Q P+++K E + E H + PG
Sbjct: 20 TVAFFCIVAYHRNDRRRTKFQFPDIEKYAEELVRLPETWNGELHQIPNYTAPREGPG 76
>Z92813-1|CAB07286.1| 393|Caenorhabditis elegans Hypothetical
protein T28A8.1 protein.
Length = 393
Score = 27.5 bits (58), Expect = 8.7
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = -3
Query: 468 VSRISLSTFGSCISVRSWSL*WSTITVSTATV 373
+S+I FG+ S+ SW WS +T T V
Sbjct: 360 LSKIRFIDFGALASIESWQSLWSILTGRTQEV 391
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,711,383
Number of Sequences: 27780
Number of extensions: 318633
Number of successful extensions: 1071
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1000
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1069
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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