Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc9j06
         (650 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    28   0.090
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   4.5  
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    22   5.9  
DQ855484-1|ABH88171.1|  130|Apis mellifera chemosensory protein ...    21   7.8  
DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    21   7.8  
AF481963-1|AAN59784.1|  130|Apis mellifera antennal-specific pro...    21   7.8  

>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 27.9 bits (59), Expect = 0.090
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -3

Query: 384 TATVQAMAASLPRSAVPAPNTNPATFHIGVSTV 286
           T +   M   +P SA+P P+ NPA  H  +S V
Sbjct: 358 TMSEDGMIEVIPLSAIPEPSKNPAMGHWQMSCV 390


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 15/42 (35%), Positives = 18/42 (42%)
 Frame = -3

Query: 402 STITVSTATVQAMAASLPRSAVPAPNTNPATFHIGVSTVGLT 277
           ST   + ATV    A+    A  A  T PAT    V+T   T
Sbjct: 210 STDASTPATVTTTGATTTLPAASATGTGPATPSAVVATSNAT 251


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 11/40 (27%), Positives = 17/40 (42%)
 Frame = +2

Query: 194 AEGPLIQHMWDQEKKHREKFEQLINEYRVRPTVLTPIWNV 313
           +E P +    + E     K + +IN  RVR      +W V
Sbjct: 87  SESPKLNPYPNWEMNDINKIDSIINIIRVRVDACDRLWGV 126


>DQ855484-1|ABH88171.1|  130|Apis mellifera chemosensory protein 3
           protein.
          Length = 130

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 7/17 (41%), Positives = 13/17 (76%)
 Frame = +2

Query: 209 IQHMWDQEKKHREKFEQ 259
           + + +D +KK+R KFE+
Sbjct: 105 LANKYDPDKKYRVKFEE 121


>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = +2

Query: 209 IQHMWDQEKKHREKFEQLINEYRVRPTVLTPIWNVAG 319
           I+ + ++E+KH    EQL  E R     L  + N  G
Sbjct: 97  IKSLEERERKHAVHKEQLSREQRFLRRRLEQLTNQTG 133


>AF481963-1|AAN59784.1|  130|Apis mellifera antennal-specific
           protein 3c precursor protein.
          Length = 130

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 7/17 (41%), Positives = 13/17 (76%)
 Frame = +2

Query: 209 IQHMWDQEKKHREKFEQ 259
           + + +D +KK+R KFE+
Sbjct: 105 LANKYDPDKKYRVKFEE 121


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 177,870
Number of Sequences: 438
Number of extensions: 3805
Number of successful extensions: 12
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19682733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)