Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc9j01
         (324 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC27B12.01c |mmm1|SPBC30B4.09c|Mdm10/Mdm12/Mmm1 complex subuni...    24   6.5  
SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3 |Schizosacc...    24   6.5  
SPAC17G6.08 |pep7|vac1|prevacuole/endosomal FYVE tethering compo...    23   8.6  

>SPBC27B12.01c |mmm1|SPBC30B4.09c|Mdm10/Mdm12/Mmm1 complex subunit
           Mmm1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 346

 Score = 23.8 bits (49), Expect = 6.5
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = -3

Query: 175 DPHGLSSAHDPQNIPPHRLQWWRLLASQ 92
           +PH L+  +D     P  L W+ +L +Q
Sbjct: 76  EPHILNLLYDVNEHEPESLDWFNVLIAQ 103


>SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 732

 Score = 23.8 bits (49), Expect = 6.5
 Identities = 8/28 (28%), Positives = 15/28 (53%)
 Frame = +3

Query: 12  EVGEEARGVTWLPDSAAPRCQHCHHHFW 95
           EVG++   +        P+C+ C+ HF+
Sbjct: 228 EVGDQGSDLEITGFKGHPKCEFCNTHFY 255


>SPAC17G6.08 |pep7|vac1|prevacuole/endosomal FYVE tethering
           component Pep7 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 536

 Score = 23.4 bits (48), Expect = 8.6
 Identities = 10/39 (25%), Positives = 13/39 (33%)
 Frame = +3

Query: 36  VTWLPDSAAPRCQHCHHHFWLAXXXXXXXXXXXIFCGSC 152
           V W  DS    C  C++ F L            + C  C
Sbjct: 270 VHWQDDSVVQICPECNNSFTLTRRRRHCRLCGRVICRFC 308


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 775,872
Number of Sequences: 5004
Number of extensions: 8567
Number of successful extensions: 32
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 87815546
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)