Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc9j01
         (324 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0181 + 7541831-7541971,7542407-7543279,7544101-7544301,754...    33   0.068
03_03_0266 - 16014740-16015045,16015566-16015601,16015623-160156...    29   0.63 
08_02_1000 + 23433447-23433946,23434078-23434279                       29   1.1  
01_07_0015 + 40469839-40470672,40471185-40471229,40471255-40471266     29   1.1  
07_01_1100 + 10097044-10097949,10098074-10098274,10098796-100989...    28   1.5  
03_05_0214 + 22040356-22040886                                         28   1.5  
03_05_0626 + 26233178-26233233,26234083-26234284,26234800-262349...    27   2.6  
11_01_0224 + 1752626-1752911,1754881-1754963,1755307-1755402           27   3.4  
08_02_0099 + 12343518-12343678,12344193-12344393,12344669-123448...    27   4.5  
07_01_0384 + 2861819-2862169                                           27   4.5  
08_02_0864 + 21994286-21994989,21996257-21996958,21997221-219973...    26   5.9  
05_04_0061 + 17582368-17582606,17582716-17583090,17593677-17594265     26   5.9  
02_05_1110 - 34182943-34182963,34183122-34183301,34184201-341845...    26   5.9  
11_06_0204 + 21191611-21192807                                         26   7.8  

>02_02_0181 +
           7541831-7541971,7542407-7543279,7544101-7544301,
           7544358-7544595,7545732-7545922
          Length = 547

 Score = 32.7 bits (71), Expect = 0.068
 Identities = 15/46 (32%), Positives = 20/46 (43%), Gaps = 1/46 (2%)
 Frame = +3

Query: 24  EARGVTWLPDSAAPRCQHCHHHFW-LAXXXXXXXXXXXIFCGSCAE 158
           E     WLPDSAA  C  C+  F  +            +FCG C++
Sbjct: 212 ETERTIWLPDSAASACMLCNVRFHPIMCSRHHCRFCGGVFCGGCSK 257


>03_03_0266 -
           16014740-16015045,16015566-16015601,16015623-16015643,
           16016331-16016591,16017504-16018985,16019834-16019989,
           16020154-16020277,16020399-16020615,16020877-16021774,
           16022947-16023291,16023371-16023565,16023751-16024453,
           16024866-16025467
          Length = 1781

 Score = 29.5 bits (63), Expect = 0.63
 Identities = 14/47 (29%), Positives = 17/47 (36%)
 Frame = +3

Query: 42  WLPDSAAPRCQHCHHHFWLAXXXXXXXXXXXIFCGSCAELSPWGSRG 182
           W+PD +   C  C   F +            IFCG C   S   S G
Sbjct: 33  WMPDHSCRVCYDCDTQFTIFNRRHHCRRCGRIFCGKCTTNSIPASSG 79


>08_02_1000 + 23433447-23433946,23434078-23434279
          Length = 233

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 3/41 (7%)
 Frame = -3

Query: 190 RTCPRDPHGLSSAHDPQNIPPHRLQW---WRLLASQKWWWQ 77
           R CP DP   + +   + +    + W   WR LAS KW W+
Sbjct: 111 RWCPPDPRLSAGSGGWRQLATAAVVWRWWWRQLASGKWRWR 151


>01_07_0015 + 40469839-40470672,40471185-40471229,40471255-40471266
          Length = 296

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = +3

Query: 48  PDSAAPRCQHCHHHFWLA 101
           P+SA  R  H HHH W A
Sbjct: 162 PNSALSRSHHHHHHMWAA 179


>07_01_1100 +
           10097044-10097949,10098074-10098274,10098796-10098991,
           10099697-10099881
          Length = 495

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 15/46 (32%), Positives = 19/46 (41%), Gaps = 1/46 (2%)
 Frame = +3

Query: 24  EARGVTWLPDSAAPRCQHCHHHFW-LAXXXXXXXXXXXIFCGSCAE 158
           EA    WLPDS A  C  C   F  +            IFC +C++
Sbjct: 176 EAEPPEWLPDSYANSCMQCAASFTVVTRGRHHCRFCGGIFCRTCSK 221


>03_05_0214 + 22040356-22040886
          Length = 176

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = -3

Query: 97  SQKWWWQCWQRGAALSGSHVTPRASSPTSTSD 2
           SQ+W  + WQ+G    G  VT RA  P S  D
Sbjct: 69  SQRWRRRRWQQGTGRRGERVTTRA--PPSAGD 98


>03_05_0626 +
           26233178-26233233,26234083-26234284,26234800-26234968,
           26235767-26238768
          Length = 1142

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 13/43 (30%), Positives = 18/43 (41%)
 Frame = +3

Query: 30  RGVTWLPDSAAPRCQHCHHHFWLAXXXXXXXXXXXIFCGSCAE 158
           RG +W+ D  A  CQ C   F L            +FC +C +
Sbjct: 62  RGASWVVD--ATHCQGCSVQFSLFTRKHHCQRCGGLFCSNCTQ 102


>11_01_0224 + 1752626-1752911,1754881-1754963,1755307-1755402
          Length = 154

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 10/35 (28%), Positives = 15/35 (42%)
 Frame = -3

Query: 106 LLASQKWWWQCWQRGAALSGSHVTPRASSPTSTSD 2
           + +S  WWW  W R     G H   R  +  + +D
Sbjct: 1   MASSTGWWW--WHRPGGRRGGHPARRGDAAAAAAD 33


>08_02_0099 +
           12343518-12343678,12344193-12344393,12344669-12344846,
           12347201-12347463,12347596-12347874,12348045-12349182,
           12349303-12349473
          Length = 796

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
 Frame = -3

Query: 190 RTCPRDPH-GLSSAHDPQNIPPHRLQWWRLLASQKWWWQCWQRGA 59
           ++C R P  G+ + HD   +P H L    +L   +W    WQ+GA
Sbjct: 737 KSCDRSPVVGILTRHD--FMPEHILGLHPVLVGSRWKRLRWQKGA 779


>07_01_0384 + 2861819-2862169
          Length = 116

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -3

Query: 91 KWWWQCWQRGAALSGSHV 38
          KWWWQ W +     GS+V
Sbjct: 38 KWWWQRWWQRRWRCGSNV 55


>08_02_0864 +
           21994286-21994989,21996257-21996958,21997221-21997374,
           21997494-21997838,21998323-21999240,21999312-21999640,
           21999709-21999832,21999901-22000071,22000188-22001648,
           22002647-22002910,22003866-22004189
          Length = 1831

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 9/37 (24%), Positives = 13/37 (35%)
 Frame = +3

Query: 42  WLPDSAAPRCQHCHHHFWLAXXXXXXXXXXXIFCGSC 152
           W+PD +   C  C   F +            +FC  C
Sbjct: 61  WMPDQSCRVCYDCDAQFTILNRRHHCRHCGRVFCARC 97


>05_04_0061 + 17582368-17582606,17582716-17583090,17593677-17594265
          Length = 400

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = -3

Query: 91  KWWWQCWQRGAALSGSHVTPRASSPTST 8
           +WWW C     A S  + +  +SS + T
Sbjct: 47  RWWWPCSSSSTARSSYYSSSMSSSVSGT 74


>02_05_1110 -
           34182943-34182963,34183122-34183301,34184201-34184546,
           34184794-34184846
          Length = 199

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 12/31 (38%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
 Frame = -3

Query: 118 QWWRLLASQKW-WWQCWQRGAALSGSHVTPR 29
           Q WR      W WW  WQ G A+ G  + P+
Sbjct: 74  QIWRSNLRVGWIWWMGWQSG-AIVGRGIAPK 103


>11_06_0204 + 21191611-21192807
          Length = 398

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
 Frame = +3

Query: 12  EVGEEARGVTWL-PDSAAPRCQHCHHHFWLA 101
           ++GE+  GV W  P S+  R  H HH  W A
Sbjct: 84  QLGEDP-GVAWFAPTSSLRRLPHPHHCDWYA 113


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,680,923
Number of Sequences: 37544
Number of extensions: 80430
Number of successful extensions: 349
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 341
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 349
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 423156300
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)