Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc9i23
         (482 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC12D12.09 |rev7||DNA polymerase zeta Rev7 |Schizosaccharomyce...    26   3.4  
SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase Cdc48|Schizosac...    25   6.0  
SPBC14F5.01 ||SPBC1861.10|sequence orphan|Schizosaccharomyces po...    25   7.9  

>SPAC12D12.09 |rev7||DNA polymerase zeta Rev7 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 213

 Score = 25.8 bits (54), Expect = 3.4
 Identities = 9/19 (47%), Positives = 15/19 (78%)
 Frame = -1

Query: 248 IFLKFKKYNLVI*ESRHII 192
           +F+K +KYN ++ +SRH I
Sbjct: 38  LFIKARKYNTIVWQSRHPI 56


>SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase
           Cdc48|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 815

 Score = 25.0 bits (52), Expect = 6.0
 Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = -3

Query: 447 TDMSILLHDQSEDDTM*L-QLVDKTYRIDLVDVVTINSC 334
           T + +L  ++ ED    + ++V    R+ L D+VTIN C
Sbjct: 87  TVLIVLTDEEMEDGVARINRVVRNNLRVRLGDIVTINPC 125


>SPBC14F5.01 ||SPBC1861.10|sequence orphan|Schizosaccharomyces
          pombe|chr 2|||Manual
          Length = 278

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = -1

Query: 89 SVIVPCVFNNLSDIREIV 36
          S +V CVF  +S++REI+
Sbjct: 39 SYLVDCVFLEISELREII 56


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,008,590
Number of Sequences: 5004
Number of extensions: 41366
Number of successful extensions: 74
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 186042952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)