Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc9i23
         (482 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0614 + 9863622-9863675,9864353-9864604,9865125-9865268,986...    32   0.28 
10_08_0704 - 20018477-20018542,20018693-20018704,20018731-200189...    29   2.0  
01_06_1009 + 33796450-33796824,33796926-33796970,33797069-337971...    29   2.0  

>03_02_0614 +
           9863622-9863675,9864353-9864604,9865125-9865268,
           9865350-9866024,9866117-9866317,9866446-9866646
          Length = 508

 Score = 31.9 bits (69), Expect = 0.28
 Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = -2

Query: 373 PYRFGGCGDDKLVSHYH-KTDSR*VLYKYFHFIRLRRNTKI 254
           PY F  CG+D LV H+  + DS   L+  + F   RR  ++
Sbjct: 136 PYIFYSCGEDGLVQHFDLRNDSPMKLFSCYSFSNSRRRVRL 176


>10_08_0704 -
           20018477-20018542,20018693-20018704,20018731-20018927,
           20018928-20018999,20019159-20021289
          Length = 825

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 16/41 (39%), Positives = 25/41 (60%), Gaps = 5/41 (12%)
 Frame = +3

Query: 6   FIDQDNNNFSDNLPD-----I*QVIKHTWNYNAFSRQISAS 113
           F+D  +NNFS ++PD     +  ++    ++NAFS QI AS
Sbjct: 224 FLDLSHNNFSGSIPDMLPEKLPNLMYLNLSFNAFSGQIPAS 264


>01_06_1009 +
           33796450-33796824,33796926-33796970,33797069-33797182,
           33797679-33797759,33798038-33798211,33798353-33798438,
           33799157-33799901
          Length = 539

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 10/31 (32%), Positives = 20/31 (64%)
 Frame = -1

Query: 209 ESRHIIDSVGYRNYYVITSFPILSGTDMLLI 117
           +   +  +VGY   Y++T+FP++ G  ++LI
Sbjct: 255 DETEVPSAVGYSALYLLTAFPVIIGISVVLI 285


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,401,655
Number of Sequences: 37544
Number of extensions: 214952
Number of successful extensions: 438
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 420
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 438
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 987904180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)