Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc9i22
(639 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0409 - 20503480-20503678,20504522-20504717,20504805-205048... 251 3e-67
01_01_0745 + 5769150-5769152,5769268-5769375,5769812-5769854,576... 251 3e-67
05_02_0095 + 6564703-6564705,6564848-6564955,6565153-6565195,656... 193 1e-49
02_02_0195 + 7676014-7676094,7676111-7676218,7676307-7676349,767... 166 1e-41
02_02_0196 + 7685933-7685961,7686086-7686284 88 5e-18
03_01_0175 - 1413599-1413934,1414326-1414526,1414660-1414962 45 6e-05
11_04_0418 - 17443989-17444082,17445153-17445406,17445709-174457... 31 0.58
06_03_1403 + 29923503-29923821,29924269-29924405,29924495-299246... 31 1.0
12_01_0536 - 4212206-4212369,4212476-4212629,4212713-4212811,421... 28 5.4
03_04_0079 + 17102623-17102644,17102794-17102897,17104461-171046... 28 7.2
>06_03_0409 -
20503480-20503678,20504522-20504717,20504805-20504847,
20505632-20505739,20505848-20505850
Length = 182
Score = 251 bits (615), Expect = 3e-67
Identities = 121/163 (74%), Positives = 133/163 (81%)
Frame = +1
Query: 97 NVMRNLHIXKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFGIRRNEKIA 276
N MR + + KL LNI VGESGDRLTRA+KVLEQL+GQ PVFSKARYTVRSFGIRRNEKIA
Sbjct: 9 NPMREIKVQKLVLNISVGESGDRLTRASKVLEQLSGQSPVFSKARYTVRSFGIRRNEKIA 68
Query: 277 VHCTVRGAKAEXILERGLKVRXYELRRDNFSATGNFGFGIXEHIDLGIKYDPSIGIYGLD 456
+ TVRG KA +LE GLKV+ YEL R NFS TG FGFGI EHIDLGIKYDPS GIYG+D
Sbjct: 69 CYVTVRGEKAMQLLESGLKVKEYELLRRNFSETGCFGFGIQEHIDLGIKYDPSTGIYGMD 128
Query: 457 FYVVLGRPGFNVAHRRRKTGKVGFPHRLTKEDAMKWFQQKYDG 585
FYVVL R G+ VA RRR +VG HR+TKEDAMKWFQ KY+G
Sbjct: 129 FYVVLERAGYRVARRRRCKSRVGIQHRVTKEDAMKWFQVKYEG 171
>01_01_0745 +
5769150-5769152,5769268-5769375,5769812-5769854,
5769945-5770140,5770836-5771034
Length = 182
Score = 251 bits (615), Expect = 3e-67
Identities = 121/163 (74%), Positives = 133/163 (81%)
Frame = +1
Query: 97 NVMRNLHIXKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFGIRRNEKIA 276
N MR + + KL LNI VGESGDRLTRA+KVLEQL+GQ PVFSKARYTVRSFGIRRNEKIA
Sbjct: 9 NPMREIKVQKLVLNISVGESGDRLTRASKVLEQLSGQSPVFSKARYTVRSFGIRRNEKIA 68
Query: 277 VHCTVRGAKAEXILERGLKVRXYELRRDNFSATGNFGFGIXEHIDLGIKYDPSIGIYGLD 456
+ TVRG KA +LE GLKV+ YEL R NFS TG FGFGI EHIDLGIKYDPS GIYG+D
Sbjct: 69 CYVTVRGEKAMQLLESGLKVKEYELLRRNFSETGCFGFGIQEHIDLGIKYDPSTGIYGMD 128
Query: 457 FYVVLGRPGFNVAHRRRKTGKVGFPHRLTKEDAMKWFQQKYDG 585
FYVVL R G+ VA RRR +VG HR+TKEDAMKWFQ KY+G
Sbjct: 129 FYVVLERAGYRVARRRRCKSRVGIQHRVTKEDAMKWFQVKYEG 171
>05_02_0095 +
6564703-6564705,6564848-6564955,6565153-6565195,
6565303-6565409,6566310-6566395,6566396-6566594
Length = 181
Score = 193 bits (470), Expect = 1e-49
Identities = 102/165 (61%), Positives = 117/165 (70%), Gaps = 2/165 (1%)
Frame = +1
Query: 97 NVMRNLHIXKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFGIRRNEKIA 276
N MR + + KL LNI VGESGDRLTRA+KVLEQL+GQ PVFSKARYTVRSFGIRRNEKIA
Sbjct: 9 NPMREIKVQKLVLNISVGESGDRLTRASKVLEQLSGQSPVFSKARYTVRSFGIRRNEKIA 68
Query: 277 VHCTVRGAKAEXILERGLKVRXYELRRDNF--SATGNFGFGIXEHIDLGIKYDPSIGIYG 450
+ TVRG KA +LE GLK+ DN S T + + +YDPS GIYG
Sbjct: 69 CYVTVRGEKAMQLLESGLKIIRIV---DNLIPSVTRSTRAKRINLSNQCFRYDPSTGIYG 125
Query: 451 LDFYVVLGRPGFNVAHRRRKTGKVGFPHRLTKEDAMKWFQQKYDG 585
+DFYVVL R G+ VA RRR +VG HR+TKEDAMKWFQ KY+G
Sbjct: 126 MDFYVVLERAGYRVARRRRCKSRVGIQHRVTKEDAMKWFQVKYEG 170
>02_02_0195 +
7676014-7676094,7676111-7676218,7676307-7676349,
7676449-7676648
Length = 143
Score = 166 bits (404), Expect = 1e-41
Identities = 83/109 (76%), Positives = 90/109 (82%)
Frame = +1
Query: 97 NVMRNLHIXKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFGIRRNEKIA 276
N MR + + KL LNI VGESGDRLTRA+KVLEQL+GQ PVFSKARYTVRSFGIRRNEKIA
Sbjct: 35 NPMREIKVQKLVLNISVGESGDRLTRASKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIA 94
Query: 277 VHCTVRGAKAEXILERGLKVRXYELRRDNFSATGNFGFGIXEHIDLGIK 423
+ TVRG KA +LE GLKV+ YEL R NFS TG FGFGI EHIDLGIK
Sbjct: 95 CYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIK 143
>02_02_0196 + 7685933-7685961,7686086-7686284
Length = 75
Score = 88.2 bits (209), Expect = 5e-18
Identities = 38/54 (70%), Positives = 43/54 (79%)
Frame = +1
Query: 424 YDPSIGIYGLDFYVVLGRPGFNVAHRRRKTGKVGFPHRLTKEDAMKWFQQKYDG 585
YDPS GIYG+DFYVVL R G+ VA RRR +VG HR+TKEDAMKWFQ KY+G
Sbjct: 11 YDPSTGIYGMDFYVVLERAGYRVARRRRCKSRVGIQHRVTKEDAMKWFQVKYEG 64
>03_01_0175 - 1413599-1413934,1414326-1414526,1414660-1414962
Length = 279
Score = 44.8 bits (101), Expect = 6e-05
Identities = 41/134 (30%), Positives = 65/134 (48%), Gaps = 10/134 (7%)
Frame = +1
Query: 97 NVMRNLHIXKLCLNICVG-ESGDR--LTRAAKVLEQLTGQQPVFSKARYTVRSFGIRRNE 267
NV + + K+ +N +G E+G+ L A K L +TGQ PV +KA+ +V SF IR
Sbjct: 98 NVHQVPKVEKIVVNCGLGAEAGNSKGLESAMKDLAMITGQWPVKTKAKKSVASFKIREGN 157
Query: 268 KIAVHCTVRGAKAEXILER----GL--KVRXYELRRDNFSATGNFGFGIXEH-IDLGIKY 426
I + T+RG L+R GL + + ++F GNF G+ + + I Y
Sbjct: 158 TIGIAVTLRGRVMFNFLDRLINLGLPRTMDFLGVNPNSFDGHGNFTIGLRDQGVFPEIPY 217
Query: 427 DPSIGIYGLDFYVV 468
+ G+D +V
Sbjct: 218 EVGGKKNGMDVCIV 231
>11_04_0418 -
17443989-17444082,17445153-17445406,17445709-17445783,
17446156-17446377,17446789-17446941,17447031-17447167,
17447615-17447933
Length = 417
Score = 31.5 bits (68), Expect = 0.58
Identities = 15/23 (65%), Positives = 17/23 (73%)
Frame = +1
Query: 265 EKIAVHCTVRGAKAEXILERGLK 333
EKIA + TVRG KA +LE GLK
Sbjct: 280 EKIACYVTVRGEKAMQLLESGLK 302
>06_03_1403 +
29923503-29923821,29924269-29924405,29924495-29924647,
29924690-29925280,29925523-29925597,29925901-29926169,
29927238-29927331
Length = 545
Score = 30.7 bits (66), Expect = 1.0
Identities = 15/23 (65%), Positives = 17/23 (73%)
Frame = +1
Query: 265 EKIAVHCTVRGAKAEXILERGLK 333
EKIA + TVRG KA +LE GLK
Sbjct: 403 EKIACYVTVRGEKAMQLLEIGLK 425
>12_01_0536 -
4212206-4212369,4212476-4212629,4212713-4212811,
4212917-4213124,4214437-4214639,4214728-4214801,
4214968-4215043,4215256-4215360
Length = 360
Score = 28.3 bits (60), Expect = 5.4
Identities = 17/55 (30%), Positives = 27/55 (49%)
Frame = +1
Query: 166 LTRAAKVLEQLTGQQPVFSKARYTVRSFGIRRNEKIAVHCTVRGAKAEXILERGL 330
+T A +++ +G FSK RY R GI K + V+ A+ E + E G+
Sbjct: 305 VTEAGGLVKDASGNDLDFSKGRYLDRDAGIIATNKYLMPLVVKAAQ-EAMKEEGI 358
>03_04_0079 +
17102623-17102644,17102794-17102897,17104461-17104660,
17104864-17105005,17105024-17105290
Length = 244
Score = 27.9 bits (59), Expect = 7.2
Identities = 8/21 (38%), Positives = 15/21 (71%)
Frame = -3
Query: 193 APTPWRHESACHRIHQHICSS 131
APTP+ ++ A H + H+C++
Sbjct: 63 APTPYENDKALHFLRHHLCAT 83
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,529,752
Number of Sequences: 37544
Number of extensions: 331710
Number of successful extensions: 842
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 824
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 841
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1573040476
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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