Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc9i22
(639 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U42845-1|AAA83599.1| 196|Caenorhabditis elegans Ribosomal prote... 279 1e-75
U64844-3|AAB18306.1| 196|Caenorhabditis elegans Ribosomal prote... 277 5e-75
U88176-4|ABB51191.1| 427|Caenorhabditis elegans Hypothetical pr... 30 1.6
U29488-1|AAA68773.2| 338|Caenorhabditis elegans Serpentine rece... 28 6.5
Z92813-8|CAB07290.1| 1057|Caenorhabditis elegans Hypothetical pr... 27 8.6
Z81465-3|CAC42253.4| 800|Caenorhabditis elegans Hypothetical pr... 27 8.6
AL161712-18|CAC70140.1| 448|Caenorhabditis elegans Hypothetical... 27 8.6
AL032658-5|CAA21748.1| 1057|Caenorhabditis elegans Hypothetical ... 27 8.6
AF129126-1|AAD25089.2| 1057|Caenorhabditis elegans POD-1 protein. 27 8.6
>U42845-1|AAA83599.1| 196|Caenorhabditis elegans Ribosomal protein,
large subunitprotein 11.2 protein.
Length = 196
Score = 279 bits (684), Expect = 1e-75
Identities = 129/165 (78%), Positives = 145/165 (87%)
Frame = +1
Query: 91 SKNVMRNLHIXKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFGIRRNEK 270
++NVMR L I KLCLNICVGESGDRLTRAAKVLEQLTGQ PVFSKARYTVR+FGIRRNEK
Sbjct: 15 ARNVMRELKIQKLCLNICVGESGDRLTRAAKVLEQLTGQTPVFSKARYTVRTFGIRRNEK 74
Query: 271 IAVHCTVRGAKAEXILERGLKVRXYELRRDNFSATGNFGFGIXEHIDLGIKYDPSIGIYG 450
IAVHCTVRG KAE ILE+GLKV+ YEL ++NFS TGNFGFG+ EHIDLGIKYDPSIGIYG
Sbjct: 75 IAVHCTVRGPKAEEILEKGLKVKEYELYKENFSDTGNFGFGVQEHIDLGIKYDPSIGIYG 134
Query: 451 LDFYVVLGRPGFNVAHRRRKTGKVGFPHRLTKEDAMKWFQQKYDG 585
+DFYVVL R G +A RRR G+VG HR+ +E+++KWFQQKYDG
Sbjct: 135 MDFYVVLDRAGRRIAKRRRAPGRVGPSHRVEREESIKWFQQKYDG 179
>U64844-3|AAB18306.1| 196|Caenorhabditis elegans Ribosomal protein,
large subunitprotein 11.1 protein.
Length = 196
Score = 277 bits (679), Expect = 5e-75
Identities = 128/164 (78%), Positives = 142/164 (86%)
Frame = +1
Query: 94 KNVMRNLHIXKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFGIRRNEKI 273
+NVMR L I KLCLNICVGESGDRLTRAAKVLEQLTGQ PVFSKARYTVR+FGIRRNEKI
Sbjct: 16 RNVMRELKIQKLCLNICVGESGDRLTRAAKVLEQLTGQTPVFSKARYTVRTFGIRRNEKI 75
Query: 274 AVHCTVRGAKAEXILERGLKVRXYELRRDNFSATGNFGFGIXEHIDLGIKYDPSIGIYGL 453
AVHCTVRG KAE ILE+GLKV+ YEL ++NFS TGNFGFG+ EHIDLGIKYDP IGIYG+
Sbjct: 76 AVHCTVRGPKAEEILEKGLKVKEYELFKENFSDTGNFGFGVQEHIDLGIKYDPGIGIYGM 135
Query: 454 DFYVVLGRPGFNVAHRRRKTGKVGFPHRLTKEDAMKWFQQKYDG 585
DFYVVL R G V+ RRR G++G HR+ KE+ +KWFQQKYDG
Sbjct: 136 DFYVVLNRNGVRVSKRRRAPGRIGPSHRVDKEETIKWFQQKYDG 179
>U88176-4|ABB51191.1| 427|Caenorhabditis elegans Hypothetical
protein F18F11.3 protein.
Length = 427
Score = 29.9 bits (64), Expect = 1.6
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = +1
Query: 427 DPSIGIYGLDFYVVLGRPGFNVAHRRRKTGKVGFPHRLTKE 549
DP GI G+ + V G F +A R+ +GK RL K+
Sbjct: 160 DPDTGISGISRFSVEGDSSFTLAKRKCSSGKCSTQLRLAKK 200
>U29488-1|AAA68773.2| 338|Caenorhabditis elegans Serpentine
receptor, class a (alpha)protein 31 protein.
Length = 338
Score = 27.9 bits (59), Expect = 6.5
Identities = 15/34 (44%), Positives = 20/34 (58%)
Frame = -1
Query: 303 FSSSDCTMDSNLFITTDTKRPHCIPSLGKYRLLS 202
F SS+C ++SNL+ T+ C SL RLLS
Sbjct: 97 FQSSECLIESNLYYYTNLFSSLCCISLFFDRLLS 130
>Z92813-8|CAB07290.1| 1057|Caenorhabditis elegans Hypothetical protein
Y76A2B.1 protein.
Length = 1057
Score = 27.5 bits (58), Expect = 8.6
Identities = 21/67 (31%), Positives = 27/67 (40%)
Frame = +2
Query: 353 GVTTSPPRVILASVFXNTLTWVSSTIPQLEFMDWTFTSYLAGQVST*HTEGVRQEKWDFP 532
GV +S PR I ASV + + SST T ++ + H QE P
Sbjct: 946 GVFSSIPRAITASVRHSEMPSSSSTTNSAAQTPSTSVTHSTTEKHHHHQHHQHQEPTSVP 1005
Query: 533 TASQRKM 553
T S R M
Sbjct: 1006 TPSSRNM 1012
>Z81465-3|CAC42253.4| 800|Caenorhabditis elegans Hypothetical
protein C09F9.3 protein.
Length = 800
Score = 27.5 bits (58), Expect = 8.6
Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
Frame = -1
Query: 294 SDCTMDSNLFITTDTKRPHCIPSLGK---YRLLSCELLQHL 181
S CT+D F D+K+ C+ S+ K Y +++ E+ H+
Sbjct: 205 SICTIDGQRFSLGDSKKNFCLQSVSKAFNYAIVASEIGSHV 245
>AL161712-18|CAC70140.1| 448|Caenorhabditis elegans Hypothetical
protein Y66D12A.23 protein.
Length = 448
Score = 27.5 bits (58), Expect = 8.6
Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Frame = +1
Query: 286 TVRGAKAEXILERGLKVRXY-ELRRDNFSATGNFGFGIXEHIDLGIKYDPSIGI 444
++R AE + RG + Y E+RR TG FG G + I + S+ +
Sbjct: 353 SLREQSAEELQRRGCGIDWYLEMRRRGQPPTGGFGIGFERMLQYLIFFRKSLNL 406
>AL032658-5|CAA21748.1| 1057|Caenorhabditis elegans Hypothetical
protein Y76A2B.1 protein.
Length = 1057
Score = 27.5 bits (58), Expect = 8.6
Identities = 21/67 (31%), Positives = 27/67 (40%)
Frame = +2
Query: 353 GVTTSPPRVILASVFXNTLTWVSSTIPQLEFMDWTFTSYLAGQVST*HTEGVRQEKWDFP 532
GV +S PR I ASV + + SST T ++ + H QE P
Sbjct: 946 GVFSSIPRAITASVRHSEMPSSSSTTNSAAQTPSTSVTHSTTEKHHHHQHHQHQEPTSVP 1005
Query: 533 TASQRKM 553
T S R M
Sbjct: 1006 TPSSRNM 1012
>AF129126-1|AAD25089.2| 1057|Caenorhabditis elegans POD-1 protein.
Length = 1057
Score = 27.5 bits (58), Expect = 8.6
Identities = 21/67 (31%), Positives = 27/67 (40%)
Frame = +2
Query: 353 GVTTSPPRVILASVFXNTLTWVSSTIPQLEFMDWTFTSYLAGQVST*HTEGVRQEKWDFP 532
GV +S PR I ASV + + SST T ++ + H QE P
Sbjct: 946 GVFSSIPRAITASVRHSEMPSSSSTTNSAAQTPSTSVTHSTTEKHHHHQHHQHQEPTSVP 1005
Query: 533 TASQRKM 553
T S R M
Sbjct: 1006 TPSSRNM 1012
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,981,174
Number of Sequences: 27780
Number of extensions: 285264
Number of successful extensions: 660
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 643
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 660
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1416829972
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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