Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc9i19
         (617 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q06690 Cluster: Uncharacterized 9.4 kDa protein in IAP2...   124   2e-27
UniRef50_Q06669 Cluster: Uncharacterized 15.5 kDa protein in IAP...   113   2e-24
UniRef50_O10328 Cluster: Uncharacterized 14.9 kDa protein; n=5; ...    52   1e-05
UniRef50_Q9YMP2 Cluster: LdOrf-85 peptide; n=16; Nucleopolyhedro...    48   1e-04
UniRef50_Q9PYS0 Cluster: ORF125; n=9; Granulovirus|Rep: ORF125 -...    37   0.44 

>UniRef50_Q06690 Cluster: Uncharacterized 9.4 kDa protein in
           IAP2-VLF1 intergenic region; n=12;
           Nucleopolyhedrovirus|Rep: Uncharacterized 9.4 kDa
           protein in IAP2-VLF1 intergenic region - Autographa
           californica nuclear polyhedrosis virus (AcMNPV)
          Length = 84

 Score =  124 bits (298), Expect = 2e-27
 Identities = 67/85 (78%), Positives = 67/85 (78%)
 Frame = +1

Query: 106 MNLYLLLGALTIFSLVYDKKENSXXXXXXXXXXXXXXXXSPAIISKNTESNVEDIPSHKA 285
           MNLYLLLGAL IFSLVYDKKENS                SPAIISKNTES VEDIPSHKA
Sbjct: 1   MNLYLLLGALAIFSLVYDKKENSIFLYLLILFLVFIIV-SPAIISKNTESTVEDIPSHKA 59

Query: 286 KSVRKKLEIEQALDAILNKNTSSID 360
           KSVRKKLEIEQALDAILNKNTSSID
Sbjct: 60  KSVRKKLEIEQALDAILNKNTSSID 84


>UniRef50_Q06669 Cluster: Uncharacterized 15.5 kDa protein in
           IAP2-VLF1 intergenic region; n=7;
           Nucleopolyhedrovirus|Rep: Uncharacterized 15.5 kDa
           protein in IAP2-VLF1 intergenic region - Autographa
           californica nuclear polyhedrosis virus (AcMNPV)
          Length = 133

 Score =  113 bits (273), Expect = 2e-24
 Identities = 55/78 (70%), Positives = 59/78 (75%)
 Frame = +1

Query: 382 MSNLMKNFFTEXXXXXXXXXXXXXXXXXXXDWLCEQVYPDKDFSLKLKRVINMFLNDEIE 561
           MSNLMKNFFTE                   +WLCEQVYPDKDFSLKLKRV+NMFLN+EIE
Sbjct: 1   MSNLMKNFFTELVKSTTFTTKVSVVKTTLSNWLCEQVYPDKDFSLKLKRVVNMFLNNEIE 60

Query: 562 NDKIYKLVETVDSSNKLS 615
           N+KIYKLVETVDSSNKLS
Sbjct: 61  NNKIYKLVETVDSSNKLS 78


>UniRef50_O10328 Cluster: Uncharacterized 14.9 kDa protein; n=5;
           Nucleopolyhedrovirus|Rep: Uncharacterized 14.9 kDa
           protein - Orgyia pseudotsugata multicapsid polyhedrosis
           virus (OpMNPV)
          Length = 130

 Score = 52.0 bits (119), Expect = 1e-05
 Identities = 21/48 (43%), Positives = 33/48 (68%)
 Frame = +1

Query: 472 DWLCEQVYPDKDFSLKLKRVINMFLNDEIENDKIYKLVETVDSSNKLS 615
           DWL  QVYPD+ FS K + V+ MF++ +++ + +Y LV T+D S  L+
Sbjct: 31  DWLNSQVYPDERFSAKWRGVLKMFVDGQLDEESVYCLVNTIDPSKLLT 78


>UniRef50_Q9YMP2 Cluster: LdOrf-85 peptide; n=16;
           Nucleopolyhedrovirus|Rep: LdOrf-85 peptide - Lymantria
           dispar multicapsid nuclear polyhedrosis virus (LdMNPV)
          Length = 86

 Score = 48.4 bits (110), Expect = 1e-04
 Identities = 22/40 (55%), Positives = 30/40 (75%)
 Frame = +1

Query: 241 KNTESNVEDIPSHKAKSVRKKLEIEQALDAILNKNTSSID 360
           K   S+  D+ + KAKS++KK ++E+A DAILNKNTSS D
Sbjct: 47  KPESSDAADLQTGKAKSIKKKRDLERAFDAILNKNTSSTD 86


>UniRef50_Q9PYS0 Cluster: ORF125; n=9; Granulovirus|Rep: ORF125 -
           Xestia c-nigrum granulosis virus (XnGV) (Xestia
           c-nigrumgranulovirus)
          Length = 85

 Score = 36.7 bits (81), Expect = 0.44
 Identities = 16/39 (41%), Positives = 23/39 (58%)
 Frame = +1

Query: 244 NTESNVEDIPSHKAKSVRKKLEIEQALDAILNKNTSSID 360
           NT+S   D+ + + K  +KK       DAILNKN SS++
Sbjct: 47  NTDSAPHDLYNEETKKAKKKKHFNDMFDAILNKNNSSLE 85


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 504,961,153
Number of Sequences: 1657284
Number of extensions: 9264039
Number of successful extensions: 23604
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 22833
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23595
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 44807090004
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)