Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc9i14
         (719 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_02_0107 - 8362468-8362488,8363212-8363349,8364390-8364500           45   7e-05
11_04_0112 - 13585293-13585988,13586095-13586619                       31   0.92 
04_03_0642 + 18289461-18290897,18291586-18291666                       28   6.5  

>11_02_0107 - 8362468-8362488,8363212-8363349,8364390-8364500
          Length = 89

 Score = 44.8 bits (101), Expect = 7e-05
 Identities = 20/50 (40%), Positives = 31/50 (62%)
 Frame = +3

Query: 171 MQGDMHRCASKCCDDTQSSLERVHGCIENCTTPLNHANNYVQNEINHFQN 320
           MQ    +CA +C D  +S  E ++ C+ENC+ P+  ANN V+ E+  FQ+
Sbjct: 36  MQQAYFKCAYECFDRRRSQ-EGINNCVENCSVPVLTANNVVETEMAKFQD 84


>11_04_0112 - 13585293-13585988,13586095-13586619
          Length = 406

 Score = 31.1 bits (67), Expect = 0.92
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -3

Query: 246 SHEPFPMRIVYRHSIWMHIYACRLAFFVN 160
           SH  +P  I+  HS+W+ +    LAFF++
Sbjct: 281 SHRSWPSFIIAMHSLWLSLICMLLAFFIS 309


>04_03_0642 + 18289461-18290897,18291586-18291666
          Length = 505

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 14/39 (35%), Positives = 26/39 (66%)
 Frame = +3

Query: 90  MVEAQKYRIEQEMTNLVNELDRSYLRKMQGDMHRCASKC 206
           +++++ +R+EQE T+++  L  SY+   Q D+ RC S C
Sbjct: 367 ILKSELWRLEQEETDILPALRLSYVYLPQ-DIKRCFSIC 404


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,010,546
Number of Sequences: 37544
Number of extensions: 374034
Number of successful extensions: 792
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 769
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 792
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1874582652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)