Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc9i06
         (611 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC830.08c |||Golgi membrane protein |Schizosaccharomyces pombe...    38   0.002
SPCC191.02c ||SPCC417.14c|acetyl-CoA ligase |Schizosaccharomyces...    26   4.9  
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb...    26   4.9  
SPCC162.07 |ent1||epsin|Schizosaccharomyces pombe|chr 3|||Manual       25   6.5  
SPAC14C4.05c |mug61||Sad1 interacting factor|Schizosaccharomyces...    25   6.5  
SPBC3E7.05c |||conserved eukaryotic protein|Schizosaccharomyces ...    25   6.5  
SPBC1683.05 |||thiamine transporter |Schizosaccharomyces pombe|c...    25   8.6  
SPBC1289.16c ||SPBC8E4.06|copper amine oxidase |Schizosaccharomy...    25   8.6  
SPCC1442.07c |||ubiquitin/metalloprotease fusion protein|Schizos...    25   8.6  

>SPCC830.08c |||Golgi membrane protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 182

 Score = 37.5 bits (83), Expect = 0.002
 Identities = 17/34 (50%), Positives = 23/34 (67%)
 Frame = +1

Query: 232 IFVIWCYLPTEYNGSLVIYYRIIRPYYQKHHGRI 333
           IF+IW  LP ++NG+ +IY  +IRPY   H  RI
Sbjct: 120 IFLIWLALP-KFNGATIIYRHLIRPYITPHVIRI 152


>SPCC191.02c ||SPCC417.14c|acetyl-CoA ligase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 662

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +3

Query: 75  G*PLKDRTMASKLQEYKDNIEQSLNDKSKPW 167
           G P   +   + L EYK   E+S+ND S  W
Sbjct: 20  GDPTVPKPNIASLDEYKRMYEESINDPSTFW 50


>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 2386

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 19/65 (29%), Positives = 27/65 (41%), Gaps = 3/65 (4%)
 Frame = +1

Query: 229 CIFVIWCYLPTEYNGSLVIYYRIIRPYYQKHHGRI--DDMANTASRLVADTIRKTN*TCS 402
           C F  WC        S + ++R +  YY  H+  I  DD+ N +  L     +    T S
Sbjct: 442 CTFAKWCINNNLDEPSNLKHFREMLDYYSSHNVTISEDDLKNFSLVLCTHVAKVNEKTNS 501

Query: 403 FF-TY 414
            F TY
Sbjct: 502 IFRTY 506


>SPCC162.07 |ent1||epsin|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 706

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +3

Query: 105 SKLQEYKDNIEQSLNDKSKPWTKYFE 182
           +++ E  D I++ LNDK K W   F+
Sbjct: 53  NEMLEVMDIIDRRLNDKGKNWRHVFK 78


>SPAC14C4.05c |mug61||Sad1 interacting factor|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 844

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 15/42 (35%), Positives = 20/42 (47%)
 Frame = -2

Query: 241 SRRCTKKMYNLFTPTFCSASSKYFVHGLLLSFRLCSMLSLYS 116
           S+   K +Y LF+P F     K  V G L  F    + S+YS
Sbjct: 651 SKLTRKVLYYLFSPLFTLELWKLRVRGALSKFPTNCLRSVYS 692


>SPBC3E7.05c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 550

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = -1

Query: 83  WLTECERRSEVERAIKLFDA 24
           W+  C RR E+++AI++  A
Sbjct: 517 WINACRRRMELQQAIEIIKA 536


>SPBC1683.05 |||thiamine transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 559

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 11/28 (39%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
 Frame = -3

Query: 186 LVQNISS-MACFCRSDFVLCCLYTLVIW 106
           L+++IS+ +ACF    F+LC + + V+W
Sbjct: 225 LIKSISTYIACFAMLIFLLCNVGSHVVW 252


>SPBC1289.16c ||SPBC8E4.06|copper amine oxidase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 794

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = +2

Query: 335 MIWPTQLPVWWQIPSERPIKPARFLHMF 418
           ++W T   + +  P + PI PA  +H+F
Sbjct: 595 VVWHTFGMIHFPAPEDFPIMPAESIHLF 622


>SPCC1442.07c |||ubiquitin/metalloprotease fusion
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 282

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 20/71 (28%), Positives = 30/71 (42%)
 Frame = -3

Query: 354 SCVGHIIDTTMMLLVVRTNDTVVDHEGPVVFSRQVAPDHEDALRKCTICSRRPFVRLVQN 175
           SC G++I      L    NDTV+D +  +     V+P     L K  +        +V+N
Sbjct: 6   SCRGNVI-----ALSFNENDTVLDAKEKLGQEIDVSPSLIKLLYKGNLSDDSHLQDVVKN 60

Query: 174 ISSMACFCRSD 142
            S + C  R D
Sbjct: 61  ESKIMCLIRQD 71


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,475,403
Number of Sequences: 5004
Number of extensions: 51573
Number of successful extensions: 134
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 267622334
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)