Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc9i06
         (611 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0945 - 22791754-22791863,22792295-22792367,22792457-227925...    34   0.077
11_06_0315 + 22318155-22318210,22319743-22319769,22319868-223199...    32   0.41 
08_02_0919 - 22627147-22627326,22627646-22627726,22627827-226281...    29   2.9  
08_02_0920 - 22633777-22633791,22635103-22635399,22635491-226356...    28   5.1  
02_01_0055 + 410661-411380,411481-413733,414486-414875,414983-41...    28   5.1  
01_05_0083 - 17987239-17987317,17988412-17988530,17989195-179893...    28   5.1  
08_02_1216 - 25344638-25345159,25346011-25346511                       28   6.7  
01_06_0492 - 29769252-29769330,29769432-29769508,29769604-297697...    27   8.9  

>07_03_0945 -
           22791754-22791863,22792295-22792367,22792457-22792552,
           22793268-22793331,22793957-22794008,22794525-22794622,
           22795108-22795166,22795981-22796013
          Length = 194

 Score = 34.3 bits (75), Expect = 0.077
 Identities = 13/41 (31%), Positives = 25/41 (60%)
 Frame = +1

Query: 238 VIWCYLPTEYNGSLVIYYRIIRPYYQKHHGRIDDMANTASR 360
           ++W   P+  +G+  +Y R +RP++ KH  +ID + N  S+
Sbjct: 93  LVWLQFPSN-SGAKHVYRRYMRPFFLKHQAKIDRILNILSK 132


>11_06_0315 +
           22318155-22318210,22319743-22319769,22319868-22319990,
           22320867-22321110,22321487-22321981
          Length = 314

 Score = 31.9 bits (69), Expect = 0.41
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +1

Query: 232 IFVIWCYLPTEYNGSLVIYYRIIRPYYQKH 321
           IF+ W  LP  +NG+  +Y   +RP + KH
Sbjct: 79  IFICWLVLPY-FNGAAFVYQNYVRPMFVKH 107


>08_02_0919 -
           22627147-22627326,22627646-22627726,22627827-22628103,
           22629451-22629755,22629835-22629987,22630318-22631076
          Length = 584

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -2

Query: 169 VHGLLLSFRLCSMLSLYSCNLDAIVRSFSG*PNV 68
           ++  L SFR  + L LY C L  +   F+G PN+
Sbjct: 114 LNSCLFSFRELTSLKLYCCGLPNLPAEFAGFPNL 147


>08_02_0920 -
           22633777-22633791,22635103-22635399,22635491-22635646,
           22636118-22636203,22637969-22638791
          Length = 458

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = -2

Query: 169 VHGLLLSFRLCSMLSLYSCNLDAIVRSFSG*PNV 68
           +H  + S R  + L L SC L A    FSG PN+
Sbjct: 138 LHAAIFSCRELTKLELGSCRLPAAPSDFSGFPNL 171


>02_01_0055 + 410661-411380,411481-413733,414486-414875,414983-418153
          Length = 2177

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 19/79 (24%), Positives = 37/79 (46%), Gaps = 8/79 (10%)
 Frame = +3

Query: 132  IEQSLNDKSKPWTKYFELAEQKVGV--------NRLYIFLVHLRDLVLPAD*IQRVPRDL 287
            I   L  K   W +Y++L+ Q++G          +L+  +  L  L L A  +Q + R +
Sbjct: 1174 ILMKLEKKELAWERYYDLSSQEIGELIRFPKMGRQLHKCIHQLPKLNLSAH-VQPITRTV 1232

Query: 288  LPYHSSLLPEASWSYR*YG 344
            L +  ++ P+  W  + +G
Sbjct: 1233 LGFELTITPDFQWDDKVHG 1251


>01_05_0083 -
           17987239-17987317,17988412-17988530,17989195-17989304,
           17989422-17989617
          Length = 167

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 4/43 (9%)
 Frame = +3

Query: 45  PLNFRSAFTFG*PLKDRTMASKL----QEYKDNIEQSLNDKSK 161
           PL + SA +FG PL    +A +L    QE +  + Q+L DK+K
Sbjct: 53  PLGYVSAASFGSPLGTPVVAPELIKAMQEQQQQLSQALLDKAK 95


>08_02_1216 - 25344638-25345159,25346011-25346511
          Length = 340

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +3

Query: 342 GQHSFPSGGRYHQKDQLNLLVFYICFK 422
           G+H  P G R+H  D+  L+ FY+  K
Sbjct: 21  GEHGLPPGFRFHPTDE-ELVTFYLAAK 46


>01_06_0492 -
           29769252-29769330,29769432-29769508,29769604-29769761,
           29769879-29769964,29770058-29770085,29771223-29771730
          Length = 311

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
 Frame = -2

Query: 223 KMYNLFTPTFCSASSKYFVHGL--LLSFRLCSMLSLYSCNLDAI 98
           K + LFTP  CS  +K+       LLSF++ S    Y  N+  I
Sbjct: 29  KWWKLFTPEQCSGINKFVAKFSIPLLSFQVISTTDPYDMNIKLI 72


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,884,985
Number of Sequences: 37544
Number of extensions: 300125
Number of successful extensions: 652
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 642
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 652
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1466594128
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)