Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc9i06
         (611 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024201-6|AAF36016.1|  183|Caenorhabditis elegans Hypothetical ...    35   0.040
AF067947-7|AAK68397.2|  295|Caenorhabditis elegans Hypothetical ...    32   0.28 
Z81522-9|CAB61005.2| 3674|Caenorhabditis elegans Hypothetical pr...    31   0.86 
Z81063-9|CAB61012.2| 3674|Caenorhabditis elegans Hypothetical pr...    31   0.86 
AJ012469-1|CAA10033.1| 3674|Caenorhabditis elegans DYS-1 protein...    31   0.86 
U64603-1|AAB04581.2|  232|Caenorhabditis elegans Hypothetical pr...    28   6.0  
Z98877-17|CAB11571.1|  389|Caenorhabditis elegans Hypothetical p...    27   8.0  
AL021497-21|CAA16413.1|  389|Caenorhabditis elegans Hypothetical...    27   8.0  
AF273823-1|AAG15172.1|  388|Caenorhabditis elegans nuclear recep...    27   8.0  
AF273822-1|AAG15171.1|  387|Caenorhabditis elegans nuclear recep...    27   8.0  
AF273821-1|AAG15170.1|  383|Caenorhabditis elegans nuclear recep...    27   8.0  
AF016447-3|AAG24018.1|  349|Caenorhabditis elegans Hypothetical ...    27   8.0  

>AC024201-6|AAF36016.1|  183|Caenorhabditis elegans Hypothetical
           protein Y71F9B.3 protein.
          Length = 183

 Score = 35.1 bits (77), Expect = 0.040
 Identities = 16/45 (35%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
 Frame = +1

Query: 232 IFVIWCYLPTEYNGSLVIYYRIIRPYYQKHHGRID-DMANTASRL 363
           IF+++ YLP+ + G+  +Y+R ++P   +H G ID  + N A R+
Sbjct: 124 IFLLYLYLPS-FLGAAKLYHRFVKPVAARHSGSIDAKIGNFADRV 167


>AF067947-7|AAK68397.2|  295|Caenorhabditis elegans Hypothetical
           protein T10B5.3 protein.
          Length = 295

 Score = 32.3 bits (70), Expect = 0.28
 Identities = 24/70 (34%), Positives = 35/70 (50%), Gaps = 2/70 (2%)
 Frame = -3

Query: 435 YLNFI*NICKKRAGLIG-LSDGICHQTGSCVGH-IIDTTMMLLVVRTNDTVVDHEGPVVF 262
           YL+ + N+ K+  GLIG L   + H       H  I T   L+  RTN+ V+  +  VVF
Sbjct: 159 YLSSLPNLEKEIGGLIGWLRSRVGHHRDLLALHGKISTIADLIKRRTNNVVIVQQPLVVF 218

Query: 261 SRQVAPDHED 232
           +  +  D ED
Sbjct: 219 NNDLDSDSED 228


>Z81522-9|CAB61005.2| 3674|Caenorhabditis elegans Hypothetical
           protein F15D3.1a protein.
          Length = 3674

 Score = 30.7 bits (66), Expect = 0.86
 Identities = 20/64 (31%), Positives = 34/64 (53%)
 Frame = +3

Query: 81  PLKDRTMASKLQEYKDNIEQSLNDKSKPWTKYFELAEQKVGVNRLYIFLVHLRDLVLPAD 260
           PL+D +   ++   KD+I + +N   +   K  ++ EQ+  VNRL + L HL    L A 
Sbjct: 712 PLQDWSEKFEVSRKKDDIRKMMNTCQE---KLIQIKEQEARVNRLQLELEHLHVAKLNAR 768

Query: 261 *IQR 272
            ++R
Sbjct: 769 QLKR 772


>Z81063-9|CAB61012.2| 3674|Caenorhabditis elegans Hypothetical
           protein F15D3.1a protein.
          Length = 3674

 Score = 30.7 bits (66), Expect = 0.86
 Identities = 20/64 (31%), Positives = 34/64 (53%)
 Frame = +3

Query: 81  PLKDRTMASKLQEYKDNIEQSLNDKSKPWTKYFELAEQKVGVNRLYIFLVHLRDLVLPAD 260
           PL+D +   ++   KD+I + +N   +   K  ++ EQ+  VNRL + L HL    L A 
Sbjct: 712 PLQDWSEKFEVSRKKDDIRKMMNTCQE---KLIQIKEQEARVNRLQLELEHLHVAKLNAR 768

Query: 261 *IQR 272
            ++R
Sbjct: 769 QLKR 772


>AJ012469-1|CAA10033.1| 3674|Caenorhabditis elegans DYS-1 protein
           protein.
          Length = 3674

 Score = 30.7 bits (66), Expect = 0.86
 Identities = 20/64 (31%), Positives = 34/64 (53%)
 Frame = +3

Query: 81  PLKDRTMASKLQEYKDNIEQSLNDKSKPWTKYFELAEQKVGVNRLYIFLVHLRDLVLPAD 260
           PL+D +   ++   KD+I + +N   +   K  ++ EQ+  VNRL + L HL    L A 
Sbjct: 712 PLQDWSEKFEVSRKKDDIRKMMNTCQE---KLIQIKEQEARVNRLQLELEHLHVAKLNAR 768

Query: 261 *IQR 272
            ++R
Sbjct: 769 QLKR 772


>U64603-1|AAB04581.2|  232|Caenorhabditis elegans Hypothetical
           protein C09B7.2 protein.
          Length = 232

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 14/48 (29%), Positives = 24/48 (50%)
 Frame = -3

Query: 336 IDTTMMLLVVRTNDTVVDHEGPVVFSRQVAPDHEDALRKCTICSRRPF 193
           + TTM LL++ T  T  DH    +  +QV  D      + ++ S++ F
Sbjct: 3   LSTTMFLLLIYTFLTTADHHEEEIKLKQVLEDRHFVKMEPSMASKKQF 50


>Z98877-17|CAB11571.1|  389|Caenorhabditis elegans Hypothetical
           protein Y51A2D.17 protein.
          Length = 389

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 16/54 (29%), Positives = 32/54 (59%), Gaps = 3/54 (5%)
 Frame = -2

Query: 154 LSFRLCSMLSLYSCNL--DAIVRSFSG*PNVNADRKLSGQ*NYLTPFT-LEDGH 2
           +S++  +++S   C+L  D I+ S+ G  +++ D+K+    N+  PF  L+ GH
Sbjct: 169 VSYKEANIVSSKECDLVADWILNSYPGFADLHKDQKIILFRNFFLPFVILQGGH 222


>AL021497-21|CAA16413.1|  389|Caenorhabditis elegans Hypothetical
           protein Y51A2D.17 protein.
          Length = 389

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 16/54 (29%), Positives = 32/54 (59%), Gaps = 3/54 (5%)
 Frame = -2

Query: 154 LSFRLCSMLSLYSCNL--DAIVRSFSG*PNVNADRKLSGQ*NYLTPFT-LEDGH 2
           +S++  +++S   C+L  D I+ S+ G  +++ D+K+    N+  PF  L+ GH
Sbjct: 169 VSYKEANIVSSKECDLVADWILNSYPGFADLHKDQKIILFRNFFLPFVILQGGH 222


>AF273823-1|AAG15172.1|  388|Caenorhabditis elegans nuclear receptor
           NHR-70 protein.
          Length = 388

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 16/54 (29%), Positives = 32/54 (59%), Gaps = 3/54 (5%)
 Frame = -2

Query: 154 LSFRLCSMLSLYSCNL--DAIVRSFSG*PNVNADRKLSGQ*NYLTPFT-LEDGH 2
           +S++  +++S   C+L  D I+ S+ G  +++ D+K+    N+  PF  L+ GH
Sbjct: 168 VSYKEANIVSSKECDLVADWILNSYPGFADLHKDQKIILFRNFFLPFVILQGGH 221


>AF273822-1|AAG15171.1|  387|Caenorhabditis elegans nuclear receptor
           NHR-70 protein.
          Length = 387

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 16/54 (29%), Positives = 32/54 (59%), Gaps = 3/54 (5%)
 Frame = -2

Query: 154 LSFRLCSMLSLYSCNL--DAIVRSFSG*PNVNADRKLSGQ*NYLTPFT-LEDGH 2
           +S++  +++S   C+L  D I+ S+ G  +++ D+K+    N+  PF  L+ GH
Sbjct: 167 VSYKEANIVSSKECDLVADWILNSYPGFADLHKDQKIILFRNFFLPFVILQGGH 220


>AF273821-1|AAG15170.1|  383|Caenorhabditis elegans nuclear receptor
           NHR-70 protein.
          Length = 383

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 16/54 (29%), Positives = 32/54 (59%), Gaps = 3/54 (5%)
 Frame = -2

Query: 154 LSFRLCSMLSLYSCNL--DAIVRSFSG*PNVNADRKLSGQ*NYLTPFT-LEDGH 2
           +S++  +++S   C+L  D I+ S+ G  +++ D+K+    N+  PF  L+ GH
Sbjct: 163 VSYKEANIVSSKECDLVADWILNSYPGFADLHKDQKIILFRNFFLPFVILQGGH 216


>AF016447-3|AAG24018.1|  349|Caenorhabditis elegans Hypothetical
           protein C54F6.8 protein.
          Length = 349

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = -3

Query: 252 VAPDHEDALRKCTICSRRPFVRLVQNISSMAC 157
           +  D +D  + CT+C R  F R    +S  AC
Sbjct: 7   ITRDSDDFEKVCTVCRRPAFTRYYGAVSCEAC 38


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,683,726
Number of Sequences: 27780
Number of extensions: 295602
Number of successful extensions: 702
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 685
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 702
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1321669750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)