Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc9i04
         (617 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292381-1|CAL23193.2|  364|Tribolium castaneum gustatory recept...    28   0.072
DQ493452-1|ABF48588.1|  305|Tribolium castaneum hedgehog protein.      25   0.51 
AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    22   3.6  
AM292326-1|CAL23138.2|  522|Tribolium castaneum gustatory recept...    22   4.7  
AM292378-1|CAL23190.2|  387|Tribolium castaneum gustatory recept...    21   6.3  
AM292379-1|CAL23191.2|  376|Tribolium castaneum gustatory recept...    21   8.3  

>AM292381-1|CAL23193.2|  364|Tribolium castaneum gustatory receptor
           candidate 60 protein.
          Length = 364

 Score = 27.9 bits (59), Expect = 0.072
 Identities = 16/50 (32%), Positives = 22/50 (44%), Gaps = 3/50 (6%)
 Frame = +1

Query: 292 LPFYMT---LARYSETSVLCAESSRCVATGGTAASRRGCMTLNTTRYTVR 432
           L +Y T   +A   +  V C  S  C A GG+A    GC T  +T    +
Sbjct: 310 LAYYSTTCDIATILDFWVRCVLSLHCAAVGGSANIMSGCSTSTSTNINTK 359


>DQ493452-1|ABF48588.1|  305|Tribolium castaneum hedgehog protein.
          Length = 305

 Score = 25.0 bits (52), Expect = 0.51
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = -2

Query: 355 DYSPRTVLMFLNILLKSYKTVTPRWTRALRLDE 257
           DY+P     FL+I L S +T+T   +  L LD+
Sbjct: 156 DYNPSQKRQFLHITLASGRTLTVTPSHLLVLDD 188


>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 22.2 bits (45), Expect = 3.6
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -1

Query: 557 TGSSRSVRVRCSAGPGPAAVASHVCRSGS 471
           T SSRSV   CS+ P  A+  S +   G+
Sbjct: 95  TYSSRSVMTSCSSVPTTASYGSDLYFPGA 123


>AM292326-1|CAL23138.2|  522|Tribolium castaneum gustatory receptor
           candidate 5 protein.
          Length = 522

 Score = 21.8 bits (44), Expect = 4.7
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -2

Query: 325 LNILLKSYKTVTPRWTRALRLDELLILAS 239
           L +LL+ YKTVT   T  L+     +L S
Sbjct: 165 LEMLLQKYKTVTYVMTGQLKAQNSNLLKS 193


>AM292378-1|CAL23190.2|  387|Tribolium castaneum gustatory receptor
           candidate 57 protein.
          Length = 387

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 8/20 (40%), Positives = 15/20 (75%)
 Frame = +3

Query: 45  LFNFLFFSVTNFLI*SVVYM 104
           L  F+F SVT+++I S+ ++
Sbjct: 367 LLGFIFGSVTSYIIISIQFI 386


>AM292379-1|CAL23191.2|  376|Tribolium castaneum gustatory receptor
           candidate 58 protein.
          Length = 376

 Score = 21.0 bits (42), Expect = 8.3
 Identities = 6/17 (35%), Positives = 11/17 (64%)
 Frame = -1

Query: 77  ICDGKEKKIEQYTFVCF 27
           ICD  + + +Q  F+C+
Sbjct: 294 ICDSAKSESQQTVFLCY 310


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 140,948
Number of Sequences: 336
Number of extensions: 2930
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15770591
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)