Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc9i04
         (617 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16A3.18 |cip1||RNA-binding protein Cip1|Schizosaccharomyces ...    27   2.2  
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po...    27   2.9  
SPBC16H5.11c |skb1|rmt5|type II protein arginine N-methyltransfe...    25   8.8  

>SPBC16A3.18 |cip1||RNA-binding protein Cip1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 490

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 18/50 (36%), Positives = 26/50 (52%)
 Frame = -2

Query: 289 PRWTRALRLDELLILASGEAAASRIAHAAPTFSLSMTGPPECSFKFNAIY 140
           P+W+ AL L      AS  AA+   + + PTF  S  G  E S K +A++
Sbjct: 67  PKWSGALSL------ASSRAASPAPSDSFPTFGYSQLGGLENSSKGSALF 110


>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1014

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = +1

Query: 274 LSSIWALPF-YMTLARYSETSVLCAESSRCV 363
           +  IW++   YMTL+  S TS +C E  RC+
Sbjct: 340 IGRIWSIKLTYMTLSGAS-TSAVCEEKDRCL 369


>SPBC16H5.11c |skb1|rmt5|type II protein arginine
           N-methyltransferase Skb1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 645

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 24/88 (27%), Positives = 34/88 (38%), Gaps = 2/88 (2%)
 Frame = +1

Query: 217 FYSLQLLQKPGSTIHQVAELSSIW-ALPFYMTLARYSETSVLCAESSRCVATGGTAASRR 393
           F   ++   P   +H+V  LSS W  L    TL       VL  E+S     G ++    
Sbjct: 73  FLDDEVAYHPEENVHKVVGLSSAWLELDSEDTLIADRSEEVLLKEASYASYCGLSSIILN 132

Query: 394 G-CMTLNTTRYTVRRTSKFCSNRHRKLL 474
           G    +N  RY    +S   S  + K L
Sbjct: 133 GPTSPMNVMRYARAVSSALNSTMNLKFL 160


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,436,608
Number of Sequences: 5004
Number of extensions: 46858
Number of successful extensions: 104
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)