Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc9i04
         (617 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY525079-1|AAS13528.1|  359|Caenorhabditis elegans serine or cys...    28   4.6  
AF026209-15|AAB71270.1|  359|Caenorhabditis elegans Serpin prote...    28   4.6  
Z92786-3|CAB63202.1|  488|Caenorhabditis elegans Hypothetical pr...    28   6.1  

>AY525079-1|AAS13528.1|  359|Caenorhabditis elegans serine or
           cysteine protease inhibitorprotein.
          Length = 359

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 4/67 (5%)
 Frame = -2

Query: 217 IAHAAPTFSLSMTGPPECSFKFNAIYKYN**TIQYLIN----IYTTLYIRKFVTEKKRKL 50
           + +A P F+L++  P +     +A+ K N   IQ L+N     Y ++ I KF  EK+  L
Sbjct: 210 LKYADPKFTLAIFLPKQRFGLVDALEKINGEYIQNLLNDLKSSYVSVQIPKFKIEKELDL 269

Query: 49  NNTLSYV 29
             TL  +
Sbjct: 270 KETLEAI 276


>AF026209-15|AAB71270.1|  359|Caenorhabditis elegans Serpin protein
           2 protein.
          Length = 359

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 4/67 (5%)
 Frame = -2

Query: 217 IAHAAPTFSLSMTGPPECSFKFNAIYKYN**TIQYLIN----IYTTLYIRKFVTEKKRKL 50
           + +A P F+L++  P +     +A+ K N   IQ L+N     Y ++ I KF  EK+  L
Sbjct: 210 LKYADPKFTLAIFLPKQRFGLVDALEKINGEYIQNLLNDLKSSYVSVQIPKFKIEKELDL 269

Query: 49  NNTLSYV 29
             TL  +
Sbjct: 270 KETLEAI 276


>Z92786-3|CAB63202.1|  488|Caenorhabditis elegans Hypothetical
           protein F47H4.6 protein.
          Length = 488

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 17/54 (31%), Positives = 30/54 (55%)
 Frame = +3

Query: 240 EARINNSSSRRALVHLGVTVLYDFSKIFRNISTVRGE*SVCCHRRNGRQPSRVH 401
           EAR+  SS R +++ + V +L+ FSKI  ++ T+    ++    +  R PS  H
Sbjct: 383 EARVFESS-RNSILQIYVGILFHFSKIDVSLKTLSNSNAIQMRDKLLRSPSFEH 435


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,922,877
Number of Sequences: 27780
Number of extensions: 279732
Number of successful extensions: 591
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 561
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 591
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1342816466
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)