Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc9i04
(617 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ... 22 5.5
AB086196-1|BAD06465.1| 289|Apis mellifera Period protein. 22 5.5
DQ325133-1|ABD14147.1| 181|Apis mellifera complementary sex det... 21 9.6
DQ325075-1|ABD14089.1| 181|Apis mellifera complementary sex det... 21 9.6
DQ325074-1|ABD14088.1| 181|Apis mellifera complementary sex det... 21 9.6
DQ325073-1|ABD14087.1| 181|Apis mellifera complementary sex det... 21 9.6
DQ325072-1|ABD14086.1| 181|Apis mellifera complementary sex det... 21 9.6
DQ325071-1|ABD14085.1| 181|Apis mellifera complementary sex det... 21 9.6
DQ325070-1|ABD14084.1| 181|Apis mellifera complementary sex det... 21 9.6
DQ325069-1|ABD14083.1| 181|Apis mellifera complementary sex det... 21 9.6
DQ325068-1|ABD14082.1| 181|Apis mellifera complementary sex det... 21 9.6
AY569696-1|AAS86649.1| 414|Apis mellifera complementary sex det... 21 9.6
AY569695-1|AAS86648.1| 414|Apis mellifera complementary sex det... 21 9.6
AF134818-1|AAD40234.1| 130|Apis mellifera lambda crystallin-lik... 21 9.6
>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
protein.
Length = 1124
Score = 21.8 bits (44), Expect = 5.5
Identities = 8/13 (61%), Positives = 9/13 (69%)
Frame = +2
Query: 359 VLPQEERPPAVEG 397
V PQEERP + G
Sbjct: 219 VSPQEERPKGING 231
>AB086196-1|BAD06465.1| 289|Apis mellifera Period protein.
Length = 289
Score = 21.8 bits (44), Expect = 5.5
Identities = 8/13 (61%), Positives = 9/13 (69%)
Frame = +2
Query: 359 VLPQEERPPAVEG 397
V PQEERP + G
Sbjct: 214 VSPQEERPKGING 226
>DQ325133-1|ABD14147.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 21.0 bits (42), Expect = 9.6
Identities = 7/14 (50%), Positives = 10/14 (71%)
Frame = -1
Query: 125 NYTIFNKHIHDTLY 84
NY +NKH ++ LY
Sbjct: 97 NYNNYNKHNYNKLY 110
>DQ325075-1|ABD14089.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 21.0 bits (42), Expect = 9.6
Identities = 7/14 (50%), Positives = 10/14 (71%)
Frame = -1
Query: 125 NYTIFNKHIHDTLY 84
NY +NKH ++ LY
Sbjct: 97 NYNNYNKHNYNKLY 110
>DQ325074-1|ABD14088.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 21.0 bits (42), Expect = 9.6
Identities = 7/14 (50%), Positives = 10/14 (71%)
Frame = -1
Query: 125 NYTIFNKHIHDTLY 84
NY +NKH ++ LY
Sbjct: 97 NYNNYNKHNYNKLY 110
>DQ325073-1|ABD14087.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 21.0 bits (42), Expect = 9.6
Identities = 7/14 (50%), Positives = 10/14 (71%)
Frame = -1
Query: 125 NYTIFNKHIHDTLY 84
NY +NKH ++ LY
Sbjct: 97 NYNNYNKHNYNKLY 110
>DQ325072-1|ABD14086.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 21.0 bits (42), Expect = 9.6
Identities = 7/14 (50%), Positives = 10/14 (71%)
Frame = -1
Query: 125 NYTIFNKHIHDTLY 84
NY +NKH ++ LY
Sbjct: 97 NYNNYNKHNYNKLY 110
>DQ325071-1|ABD14085.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 21.0 bits (42), Expect = 9.6
Identities = 7/14 (50%), Positives = 10/14 (71%)
Frame = -1
Query: 125 NYTIFNKHIHDTLY 84
NY +NKH ++ LY
Sbjct: 97 NYNNYNKHNYNKLY 110
>DQ325070-1|ABD14084.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 21.0 bits (42), Expect = 9.6
Identities = 7/14 (50%), Positives = 10/14 (71%)
Frame = -1
Query: 125 NYTIFNKHIHDTLY 84
NY +NKH ++ LY
Sbjct: 97 NYNNYNKHNYNKLY 110
>DQ325069-1|ABD14083.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 21.0 bits (42), Expect = 9.6
Identities = 7/14 (50%), Positives = 10/14 (71%)
Frame = -1
Query: 125 NYTIFNKHIHDTLY 84
NY +NKH ++ LY
Sbjct: 97 NYNNYNKHNYNKLY 110
>DQ325068-1|ABD14082.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 21.0 bits (42), Expect = 9.6
Identities = 7/14 (50%), Positives = 10/14 (71%)
Frame = -1
Query: 125 NYTIFNKHIHDTLY 84
NY +NKH ++ LY
Sbjct: 97 NYNNYNKHNYNKLY 110
>AY569696-1|AAS86649.1| 414|Apis mellifera complementary sex
determiner protein.
Length = 414
Score = 21.0 bits (42), Expect = 9.6
Identities = 7/14 (50%), Positives = 10/14 (71%)
Frame = -1
Query: 125 NYTIFNKHIHDTLY 84
NY +NKH ++ LY
Sbjct: 330 NYNNYNKHNYNKLY 343
>AY569695-1|AAS86648.1| 414|Apis mellifera complementary sex
determiner protein.
Length = 414
Score = 21.0 bits (42), Expect = 9.6
Identities = 7/14 (50%), Positives = 10/14 (71%)
Frame = -1
Query: 125 NYTIFNKHIHDTLY 84
NY +NKH ++ LY
Sbjct: 330 NYNNYNKHNYNKLY 343
>AF134818-1|AAD40234.1| 130|Apis mellifera lambda crystallin-like
protein protein.
Length = 130
Score = 21.0 bits (42), Expect = 9.6
Identities = 6/15 (40%), Positives = 12/15 (80%)
Frame = +3
Query: 9 GVKPVCETYESVLFN 53
G+K CETY++ +++
Sbjct: 62 GMKKYCETYKNSIYD 76
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 166,857
Number of Sequences: 438
Number of extensions: 3663
Number of successful extensions: 14
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18337950
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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