Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc9i03
         (192 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0603 - 16117695-16118396,16118679-16118939,16120100-161201...    25   8.5  

>05_03_0603 -
           16117695-16118396,16118679-16118939,16120100-16120144,
           16120362-16120453,16120568-16120706,16121027-16121063,
           16121147-16121434,16122000-16122074,16122505-16122581,
           16123092-16123256,16123387-16123543,16124558-16124733,
           16124828-16124940,16125398-16125428,16126487-16126605,
           16126696-16126789,16127384-16127458,16127548-16127666,
           16127751-16127907,16129252-16129398
          Length = 1022

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
 Frame = +1

Query: 7   RVGRA*PFKNKSVVINSKKFVYSENLIDFXKILFRT-QXXYDELRSRCLA 153
           R+G+  P +  SV +N+K+ +YS+N+  F  +   T Q  +  L    LA
Sbjct: 58  RMGK--PDEALSVCLNAKEQLYSDNIFHFDDLTLSTLQIVFQRLERLDLA 105


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,489,956
Number of Sequences: 37544
Number of extensions: 33313
Number of successful extensions: 37
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37
length of database: 14,793,348
effective HSP length: 43
effective length of database: 13,178,956
effective search space used: 263579120
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)