Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc9h23
         (686 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated protei...    29   0.48 
SPBC1861.02 |abp2||ARS binding protein Abp2|Schizosaccharomyces ...    29   0.48 
SPAC824.05 |vps16||HOPS complex subunit Vps16 |Schizosaccharomyc...    27   2.5  
SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolo...    26   4.4  
SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces p...    25   7.8  
SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces pom...    25   7.8  

>SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated
            protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1462

 Score = 29.5 bits (63), Expect = 0.48
 Identities = 20/86 (23%), Positives = 42/86 (48%)
 Frame = +2

Query: 305  LKNYFHGICILVIKASSTRCQNVAVEGIEIGRLILTILNTMTVSIVCRDMSVLNLELKEK 484
            +  Y + ICIL+ KA   + + V + GIE    ++  +  +      + +     +  + 
Sbjct: 1310 MHTYHNIICILIEKAEKCKDEPVILAGIEDNITLIAEIADL------QGLYEFTQQRLQS 1363

Query: 485  INFELGKIL*PSLMMILTWVVLLFKD 562
            +N E G+   P L+M+L+ +++  KD
Sbjct: 1364 LNTETGEKSAPLLLMLLSAILMRLKD 1389


>SPBC1861.02 |abp2||ARS binding protein Abp2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 527

 Score = 29.5 bits (63), Expect = 0.48
 Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
 Frame = +1

Query: 364 PKRGGGRNRNWKADTDHFEHDDRVN--SVPRHVSFKPGAKGKNK 489
           PK   G N +W   T+  E ++  N   VPR     PGA+ K K
Sbjct: 299 PKESDGLNDSWSRQTNQVETENVENEAGVPRKRGRPPGARNKIK 342


>SPAC824.05 |vps16||HOPS complex subunit Vps16 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 835

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 4/58 (6%)
 Frame = +2

Query: 305 LKNYFHGICILVIKAS----STRCQNVAVEGIEIGRLILTILNTMTVSIVCRDMSVLN 466
           LK+  H      ++AS    S   Q V +E   +G+  L + N      VCR++ VLN
Sbjct: 372 LKDELHDAVDTCVQASLNEFSIEWQKVLLEAASLGKNSLRMYNHQEYVDVCRELRVLN 429


>SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolog
           3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 925

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = +1

Query: 409 DHFEHDDRVNSVPRHVSFKPGAKGKNKFRTWKNPLALLDD 528
           DH  H+  V    + ++  PGA  +N++R + + L L  D
Sbjct: 356 DHTPHETTVEYFRQRLNLSPGAAIENQYRLYFSRLQLQAD 395


>SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1272

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 11/53 (20%), Positives = 25/53 (47%)
 Frame = +2

Query: 224 IKKSYYSIIIGFISVNYSTRM*ENKETLKNYFHGICILVIKASSTRCQNVAVE 382
           + +SYY I +  ++ NYS ++  ++   +    G+C + +          A+E
Sbjct: 797 VSQSYY-IFVSHVTANYSNQLLFSQSFYQGILDGLCNIDVPDDKREVVEAAIE 848


>SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 963

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = +1

Query: 544 SSALQGPVRKSSFRGRGRMYSPAPQG 621
           +SA  GPV      G G +YSPA  G
Sbjct: 561 TSATSGPVVGKQSAGYGGIYSPATHG 586


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,915,747
Number of Sequences: 5004
Number of extensions: 61327
Number of successful extensions: 157
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)