Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc9h23
(686 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_03_0295 - 17383064-17383087,17383314-17383463,17383922-173840... 30 1.5
06_01_0584 - 4178391-4178732,4178854-4178915,4180361-4180481,418... 30 2.0
01_01_0460 + 3404272-3404274,3405198-3405302,3405363-3405447,340... 30 2.0
06_03_0160 + 17366392-17367525,17367856-17368206 29 2.6
05_07_0274 - 28873531-28873644,28873727-28873981,28874111-288741... 29 3.5
07_01_0505 - 3759254-3759490,3759846-3759989,3760135-3760347,376... 29 4.6
01_05_0126 - 18391879-18391937,18392021-18392102,18392508-183926... 28 6.0
07_03_1007 + 23268771-23269021,23269098-23269128 28 8.0
>02_03_0295 -
17383064-17383087,17383314-17383463,17383922-17384038,
17385506-17385592,17386269-17386408,17387708-17387839,
17387927-17387936,17388949-17388999,17389038-17389083,
17389570-17389690,17389775-17389913
Length = 338
Score = 30.3 bits (65), Expect = 1.5
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = -3
Query: 672 VPRQYTRNKFLFSVSVASLRSWRVHSP-TSPERTFPDRSLKSRTTHVNII 526
VP ++ R F+V +L+ + P TSP T PD S++ HVN +
Sbjct: 278 VPDEFGRMPIEFAVRCGTLKDVNILFPLTSPMPTVPDWSVRGIIRHVNTL 327
>06_01_0584 -
4178391-4178732,4178854-4178915,4180361-4180481,
4180592-4180732,4180830-4180959,4182306-4182436,
4182528-4182601,4182680-4182741,4183135-4183209,
4184658-4184760,4184835-4184991,4185549-4185743,
4186204-4186282,4186697-4186806,4187249-4187374,
4187475-4187541,4187622-4187791,4187880-4188018,
4188361-4188522,4188672-4188772,4188852-4188994,
4189438-4189537,4190364-4190414,4191062-4191169,
4191279-4191494,4191585-4191721,4191820-4191915,
4192017-4192234,4192764-4192925,4193006-4193163,
4194221-4194379
Length = 1364
Score = 29.9 bits (64), Expect = 2.0
Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Frame = +1
Query: 322 RYLYTGD*SFFDTMPKRGGGRNRNWKAD--TDHFEHDDRVN 438
R LYT D S D P+ GGG+ R+ +D T+ E +D V+
Sbjct: 15 RPLYTLDESDDDLPPRGGGGKGRDRHSDGPTERIEREDAVS 55
>01_01_0460 +
3404272-3404274,3405198-3405302,3405363-3405447,
3405626-3405680,3405998-3406136,3406215-3406358
Length = 176
Score = 29.9 bits (64), Expect = 2.0
Identities = 16/55 (29%), Positives = 26/55 (47%)
Frame = +2
Query: 386 IEIGRLILTILNTMTVSIVCRDMSVLNLELKEKINFELGKIL*PSLMMILTWVVL 550
+ +G+L+ +LN I C VL L ++K+ K+ P MM+ W L
Sbjct: 91 VPVGKLLKPVLNEHVTPITCYWSLVLLLHSEDKLVRVFKKVYPPVKMMVPIWKAL 145
>06_03_0160 + 17366392-17367525,17367856-17368206
Length = 494
Score = 29.5 bits (63), Expect = 2.6
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = +1
Query: 373 GGGRNRNWKADTDHFEHDDRVNSVPRH 453
G N NW++D+ HF+ DD + V ++
Sbjct: 152 GSSSNSNWRSDSVHFKRDDDLVGVDKN 178
>05_07_0274 -
28873531-28873644,28873727-28873981,28874111-28874179,
28874277-28874415,28874511-28875076,28875225-28875326,
28875425-28875491,28875576-28876072,28876148-28876212,
28876470-28876567,28876652-28876694,28876870-28876963,
28877325-28877360,28877454-28877542,28877667-28877788,
28878193-28878404
Length = 855
Score = 29.1 bits (62), Expect = 3.5
Identities = 14/39 (35%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Frame = +1
Query: 400 ADTDHFEHDDRVNSV-PRHVSFKPGAKGKNKFRTWKNPL 513
+D+DH + D+RV+S+ P HV KP + + +WK +
Sbjct: 306 SDSDHTDVDERVSSLFPFHVDIKP-PEEETHLDSWKTQM 343
>07_01_0505 -
3759254-3759490,3759846-3759989,3760135-3760347,
3760439-3760990,3761339-3761806,3761959-3762023,
3762133-3762265,3763798-3764022
Length = 678
Score = 28.7 bits (61), Expect = 4.6
Identities = 20/82 (24%), Positives = 38/82 (46%), Gaps = 1/82 (1%)
Frame = +1
Query: 406 TDHFEHDDRVNSVPRHVSFKPGAKGKNKFRTWKNPLALLDDDIDM-GSSALQGPVRKSSF 582
+ H+++ N ++ + KP GK + NP AL D+ G +L+G +K++
Sbjct: 168 SQHYQYQPTYNK-QQNTTGKPSNNGKTE-----NPAALPQGDVSANGVDSLKGQ-KKTNL 220
Query: 583 RGRGRMYSPAPQGSHGHTKKKF 648
+ +P GS+G +F
Sbjct: 221 LPKASQNTPGSNGSYGRPSGRF 242
>01_05_0126 -
18391879-18391937,18392021-18392102,18392508-18392667,
18392739-18392807,18392850-18392992,18393069-18393203,
18393283-18393341,18394090-18394187,18394347-18394510,
18394586-18394647,18394803-18394977,18396331-18396588,
18396694-18396841,18398458-18398813
Length = 655
Score = 28.3 bits (60), Expect = 6.0
Identities = 12/41 (29%), Positives = 22/41 (53%)
Frame = -1
Query: 128 LDVISNPNISKINHQKLNSVSLVNLKPVLFQCETKWMATFV 6
L +I+NP + KINH +N++ ++ E K + F+
Sbjct: 465 LSIITNPTLLKINHYSINNMEFHHVHSERTSKEDKHSSRFI 505
>07_03_1007 + 23268771-23269021,23269098-23269128
Length = 93
Score = 27.9 bits (59), Expect = 8.0
Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = -3
Query: 666 RQYTRNKFLFSVSVASLRSWRVHSPTSPERT-FPDRS 559
+Q +NK + S +S R WR TSP+ T F RS
Sbjct: 33 QQIQQNKMNVTTSSSSKRQWRCDGRTSPQHTRFQRRS 69
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,940,402
Number of Sequences: 37544
Number of extensions: 360879
Number of successful extensions: 832
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 812
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 831
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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