Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc9h23
(686 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC024015-1|AAH24015.1| 289|Homo sapiens C1q and tumor necrosis ... 36 0.14
BC022187-1|AAH22187.1| 289|Homo sapiens C1q and tumor necrosis ... 36 0.14
AF329839-1|AAK17963.1| 289|Homo sapiens complement-c1q tumor ne... 36 0.14
AK092764-1|BAC03970.1| 575|Homo sapiens protein ( Homo sapiens ... 34 0.41
BC110300-1|AAI10301.1| 335|Homo sapiens LARP2 protein protein. 33 0.72
M76729-1|AAA59993.1| 1838|Homo sapiens pro-alpha-1 type V collag... 30 6.7
D90279-1|BAA14323.1| 1838|Homo sapiens collagen alpha 1(V) chain... 30 6.7
AL645768-1|CAI17261.1| 1838|Homo sapiens collagen type V alpha 1... 30 6.7
AL603650-2|CAI39859.1| 1838|Homo sapiens collagen type V alpha 1... 30 6.7
AL591890-1|CAI15483.1| 1838|Homo sapiens collagen type V alpha 1... 30 6.7
AB209864-1|BAD93101.1| 1792|Homo sapiens Pro-alpha-1 type V coll... 30 6.7
>BC024015-1|AAH24015.1| 289|Homo sapiens C1q and tumor necrosis
factor related protein 7 protein.
Length = 289
Score = 35.9 bits (79), Expect = 0.14
Identities = 21/73 (28%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
Frame = +1
Query: 469 GAKGKNKFRTWKNPLALLDDDIDMGSSALQGPVRKSSFRGR-GRMYSPAPQGSHGHTKKK 645
G KG R PL L + D G + +GP+ +G G + P P+G G
Sbjct: 74 GEKGTAGLRGKTGPLGLAGEKGDQGETGKKGPIGPEGEKGEVGPIGPPGPKGDRGEQGDP 133
Query: 646 FIPGVLPWYQIII 684
+PGV I++
Sbjct: 134 GLPGVCRCGSIVL 146
>BC022187-1|AAH22187.1| 289|Homo sapiens C1q and tumor necrosis
factor related protein 7 protein.
Length = 289
Score = 35.9 bits (79), Expect = 0.14
Identities = 21/73 (28%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
Frame = +1
Query: 469 GAKGKNKFRTWKNPLALLDDDIDMGSSALQGPVRKSSFRGR-GRMYSPAPQGSHGHTKKK 645
G KG R PL L + D G + +GP+ +G G + P P+G G
Sbjct: 74 GEKGTAGLRGKTGPLGLAGEKGDQGETGKKGPIGPEGEKGEVGPIGPPGPKGDRGEQGDP 133
Query: 646 FIPGVLPWYQIII 684
+PGV I++
Sbjct: 134 GLPGVCRCGSIVL 146
>AF329839-1|AAK17963.1| 289|Homo sapiens complement-c1q tumor
necrosis factor-related protein protein.
Length = 289
Score = 35.9 bits (79), Expect = 0.14
Identities = 21/73 (28%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
Frame = +1
Query: 469 GAKGKNKFRTWKNPLALLDDDIDMGSSALQGPVRKSSFRGR-GRMYSPAPQGSHGHTKKK 645
G KG R PL L + D G + +GP+ +G G + P P+G G
Sbjct: 74 GEKGTAGLRGKTGPLGLAGEKGDQGETGKKGPIGPEGEKGEVGPIGPPGPKGDRGEQGDP 133
Query: 646 FIPGVLPWYQIII 684
+PGV I++
Sbjct: 134 GLPGVCRCGSIVL 146
>AK092764-1|BAC03970.1| 575|Homo sapiens protein ( Homo sapiens
cDNA FLJ35445 fis, clone SMINT2003551, weakly similar to
Drosophila melanogaster La related protein (larp) mRNA.
).
Length = 575
Score = 34.3 bits (75), Expect = 0.41
Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Frame = +1
Query: 397 KADTDHFEH-DDRVNSVPRHVSFKPGAKGKNKFRTWKNPLALLDDDIDMGSSALQGPVRK 573
++++D E+ + ++N +VS + R WK DD D+ S +G +
Sbjct: 39 RSNSDSKENRETKLNGPGENVSEDEAQSSNQRKRGWKRDREKRDDQDDVSSVRSEGGNIR 98
Query: 574 SSFRGRGR 597
SFRGRGR
Sbjct: 99 GSFRGRGR 106
>BC110300-1|AAI10301.1| 335|Homo sapiens LARP2 protein protein.
Length = 335
Score = 33.5 bits (73), Expect = 0.72
Identities = 16/39 (41%), Positives = 21/39 (53%)
Frame = +1
Query: 481 KNKFRTWKNPLALLDDDIDMGSSALQGPVRKSSFRGRGR 597
+N R+WK DD D+ S +G + SFRGRGR
Sbjct: 115 RNDTRSWKRDREKRDDQDDVSSVRSEGGNIRGSFRGRGR 153
>M76729-1|AAA59993.1| 1838|Homo sapiens pro-alpha-1 type V collagen
protein.
Length = 1838
Score = 30.3 bits (65), Expect = 6.7
Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 1/69 (1%)
Frame = +1
Query: 469 GAKGKNKFRTWKNPLALLDDDIDMGSSALQGPVRKSSFRGRGRMY-SPAPQGSHGHTKKK 645
G KG++ F +K + + D ++G +G +GRG P P G G K
Sbjct: 808 GEKGEDGFPGFKGDMGIKGDRGEIGPPGPRGEDGPEGPKGRGGPNGDPGPLGPPGEKGKL 867
Query: 646 FIPGVLPWY 672
+PG LP Y
Sbjct: 868 GVPG-LPGY 875
>D90279-1|BAA14323.1| 1838|Homo sapiens collagen alpha 1(V) chain
precursor protein.
Length = 1838
Score = 30.3 bits (65), Expect = 6.7
Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 1/69 (1%)
Frame = +1
Query: 469 GAKGKNKFRTWKNPLALLDDDIDMGSSALQGPVRKSSFRGRGRMY-SPAPQGSHGHTKKK 645
G KG++ F +K + + D ++G +G +GRG P P G G K
Sbjct: 808 GEKGEDGFPGFKGDMGIKGDRGEIGPPGPRGEDGPEGPKGRGGPNGDPGPLGPPGEKGKL 867
Query: 646 FIPGVLPWY 672
+PG LP Y
Sbjct: 868 GVPG-LPGY 875
>AL645768-1|CAI17261.1| 1838|Homo sapiens collagen type V alpha 1
protein.
Length = 1838
Score = 30.3 bits (65), Expect = 6.7
Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 1/69 (1%)
Frame = +1
Query: 469 GAKGKNKFRTWKNPLALLDDDIDMGSSALQGPVRKSSFRGRGRMY-SPAPQGSHGHTKKK 645
G KG++ F +K + + D ++G +G +GRG P P G G K
Sbjct: 808 GEKGEDGFPGFKGDMGIKGDRGEIGPPGPRGEDGPEGPKGRGGPNGDPGPLGPPGEKGKL 867
Query: 646 FIPGVLPWY 672
+PG LP Y
Sbjct: 868 GVPG-LPGY 875
>AL603650-2|CAI39859.1| 1838|Homo sapiens collagen type V alpha 1
protein.
Length = 1838
Score = 30.3 bits (65), Expect = 6.7
Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 1/69 (1%)
Frame = +1
Query: 469 GAKGKNKFRTWKNPLALLDDDIDMGSSALQGPVRKSSFRGRGRMY-SPAPQGSHGHTKKK 645
G KG++ F +K + + D ++G +G +GRG P P G G K
Sbjct: 808 GEKGEDGFPGFKGDMGIKGDRGEIGPPGPRGEDGPEGPKGRGGPNGDPGPLGPPGEKGKL 867
Query: 646 FIPGVLPWY 672
+PG LP Y
Sbjct: 868 GVPG-LPGY 875
>AL591890-1|CAI15483.1| 1838|Homo sapiens collagen type V alpha 1
protein.
Length = 1838
Score = 30.3 bits (65), Expect = 6.7
Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 1/69 (1%)
Frame = +1
Query: 469 GAKGKNKFRTWKNPLALLDDDIDMGSSALQGPVRKSSFRGRGRMY-SPAPQGSHGHTKKK 645
G KG++ F +K + + D ++G +G +GRG P P G G K
Sbjct: 808 GEKGEDGFPGFKGDMGIKGDRGEIGPPGPRGEDGPEGPKGRGGPNGDPGPLGPPGEKGKL 867
Query: 646 FIPGVLPWY 672
+PG LP Y
Sbjct: 868 GVPG-LPGY 875
>AB209864-1|BAD93101.1| 1792|Homo sapiens Pro-alpha-1 type V
collagen variant protein.
Length = 1792
Score = 30.3 bits (65), Expect = 6.7
Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 1/69 (1%)
Frame = +1
Query: 469 GAKGKNKFRTWKNPLALLDDDIDMGSSALQGPVRKSSFRGRGRMY-SPAPQGSHGHTKKK 645
G KG++ F +K + + D ++G +G +GRG P P G G K
Sbjct: 762 GEKGEDGFPGFKGDMGIKGDRGEIGPPGPRGEDGPEGPKGRGGPNGDPGPLGPPGEKGKL 821
Query: 646 FIPGVLPWY 672
+PG LP Y
Sbjct: 822 GVPG-LPGY 829
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 99,929,802
Number of Sequences: 237096
Number of extensions: 2079245
Number of successful extensions: 5057
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 4906
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5057
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 7839245960
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -