Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc9h23
         (686 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ318090-1|CAC41645.1|  672|Drosophila melanogaster nuclear RNA ...    39   0.007
AJ251947-1|CAB64382.2|  672|Drosophila melanogaster tip associat...    39   0.007
AE014298-1507|AAF47959.3|  672|Drosophila melanogaster CG1664-PA...    39   0.007
BT004481-1|AAO42645.1|  771|Drosophila melanogaster LD34250p pro...    33   0.28 
AE014298-1948|AAF48305.1|  789|Drosophila melanogaster CG9941-PA...    33   0.28 

>AJ318090-1|CAC41645.1|  672|Drosophila melanogaster nuclear RNA
           export factor 1 (NXF1) protein.
          Length = 672

 Score = 38.7 bits (86), Expect = 0.007
 Identities = 40/126 (31%), Positives = 52/126 (41%), Gaps = 18/126 (14%)
 Frame = +1

Query: 361 MPKRGGGRNR-------------NWKADTDHFEHDDRVNSVPRH---VSFKPG--AKGKN 486
           MPKRGGG ++             N   D D F+ +DR     R+   VSFKP      K 
Sbjct: 1   MPKRGGGSSQRYNNNVGNGGGRYNAPEDFDDFDVEDRQRRKDRNKRRVSFKPSQCLHNKK 60

Query: 487 KFRTWKNPLALLDDDIDMGSSALQGPVRKSSFRGRGRMYSPAPQGSHGHTKKKFIPGVLP 666
             +     L   D+D DM         R +S R RG   SP P+G  G    K +P    
Sbjct: 61  DIKLRPEDLRRWDEDDDMSDMTTAVKDRPTS-RRRG---SPIPRGKFG----KLMPNSFG 112

Query: 667 WYQIII 684
           WYQ+ +
Sbjct: 113 WYQVTL 118


>AJ251947-1|CAB64382.2|  672|Drosophila melanogaster tip associating
           protein protein.
          Length = 672

 Score = 38.7 bits (86), Expect = 0.007
 Identities = 40/126 (31%), Positives = 52/126 (41%), Gaps = 18/126 (14%)
 Frame = +1

Query: 361 MPKRGGGRNR-------------NWKADTDHFEHDDRVNSVPRH---VSFKPG--AKGKN 486
           MPKRGGG ++             N   D D F+ +DR     R+   VSFKP      K 
Sbjct: 1   MPKRGGGSSQRYNNNVGNGGGRYNAPEDFDDFDVEDRQRRKDRNKRRVSFKPSQCLHNKK 60

Query: 487 KFRTWKNPLALLDDDIDMGSSALQGPVRKSSFRGRGRMYSPAPQGSHGHTKKKFIPGVLP 666
             +     L   D+D DM         R +S R RG   SP P+G  G    K +P    
Sbjct: 61  DIKLRPEDLRRWDEDDDMSDMTTAVKDRPTS-RRRG---SPIPRGKFG----KLMPNSFG 112

Query: 667 WYQIII 684
           WYQ+ +
Sbjct: 113 WYQVTL 118


>AE014298-1507|AAF47959.3|  672|Drosophila melanogaster CG1664-PA
           protein.
          Length = 672

 Score = 38.7 bits (86), Expect = 0.007
 Identities = 40/126 (31%), Positives = 52/126 (41%), Gaps = 18/126 (14%)
 Frame = +1

Query: 361 MPKRGGGRNR-------------NWKADTDHFEHDDRVNSVPRH---VSFKPG--AKGKN 486
           MPKRGGG ++             N   D D F+ +DR     R+   VSFKP      K 
Sbjct: 1   MPKRGGGSSQRYNNNVGNGGGRYNAPEDFDDFDVEDRQRRKDRNKRRVSFKPSQCLHNKK 60

Query: 487 KFRTWKNPLALLDDDIDMGSSALQGPVRKSSFRGRGRMYSPAPQGSHGHTKKKFIPGVLP 666
             +     L   D+D DM         R +S R RG   SP P+G  G    K +P    
Sbjct: 61  DIKLRPEDLRRWDEDDDMSDMTTAVKDRPTS-RRRG---SPIPRGKFG----KLMPNSFG 112

Query: 667 WYQIII 684
           WYQ+ +
Sbjct: 113 WYQVTL 118


>BT004481-1|AAO42645.1|  771|Drosophila melanogaster LD34250p
           protein.
          Length = 771

 Score = 33.5 bits (73), Expect = 0.28
 Identities = 23/59 (38%), Positives = 32/59 (54%), Gaps = 5/59 (8%)
 Frame = +1

Query: 424 DDRVNSVPRHVS--FKPGAKGKN-KFRTWKNPLALL--DDDIDMGSSALQGPVRKSSFR 585
           DD V+S    +S    PG+K KN   ++ K  +A L  DDD+D  SS   GP  +SS +
Sbjct: 528 DDDVDSENEKLSPLLSPGSKSKNVSSKSLKQVVACLEADDDVDNKSSTGDGPTEESSLK 586


>AE014298-1948|AAF48305.1|  789|Drosophila melanogaster CG9941-PA
           protein.
          Length = 789

 Score = 33.5 bits (73), Expect = 0.28
 Identities = 23/59 (38%), Positives = 32/59 (54%), Gaps = 5/59 (8%)
 Frame = +1

Query: 424 DDRVNSVPRHVS--FKPGAKGKN-KFRTWKNPLALL--DDDIDMGSSALQGPVRKSSFR 585
           DD V+S    +S    PG+K KN   ++ K  +A L  DDD+D  SS   GP  +SS +
Sbjct: 546 DDDVDSENEKLSPLLSPGSKSKNVSSKSLKQVVACLEADDDVDNKSSTGDGPTEESSLK 604


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 30,282,476
Number of Sequences: 53049
Number of extensions: 620976
Number of successful extensions: 1623
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1580
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1623
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 3013199100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)