Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc9h21
         (718 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC27B12.11c |||transcription factor |Schizosaccharomyces pombe...    31   0.22 
SPBC21H7.05 |sfc6||transcription factor TFIIIC complex subunit S...    29   0.88 
SPCC1672.07 |||U3 snoRNP-associated protein Utp21 |Schizosacchar...    27   2.7  
SPBC106.11c |plg7||phospholipase A2 |Schizosaccharomyces pombe|c...    25   8.2  

>SPBC27B12.11c |||transcription factor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 738

 Score = 30.7 bits (66), Expect = 0.22
 Identities = 14/42 (33%), Positives = 26/42 (61%), Gaps = 4/42 (9%)
 Frame = +1

Query: 472 SFNGNGIKAENVN----KDRNHASR*LRQMFHMPDLRESHHN 585
           ++N + I AENVN    +  +H +  ++  F +PDL+ +HH+
Sbjct: 518 TYNESSIAAENVNNWMLETNDHENLSMQSHFEVPDLKMNHHD 559


>SPBC21H7.05 |sfc6||transcription factor TFIIIC complex subunit
           Sfc6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 582

 Score = 28.7 bits (61), Expect = 0.88
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = -1

Query: 328 FLRFHFWICVLKYQLFPLDSVEKSIIGIIDYIHMD 224
           F+ +H W  VL+ +  P  SVE SI+G +  +  D
Sbjct: 264 FILYHDWGSVLQLEWCPTISVEDSILGFLAVVCSD 298


>SPCC1672.07 |||U3 snoRNP-associated protein Utp21
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 902

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 10/38 (26%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = -1

Query: 424 II*SVESPQQSG-ISHLEKLSQWLLSCVKHRFGFLRFH 314
           II  ++  Q+ G ++HL+   +W+++C   R  ++  H
Sbjct: 105 IIWDIDVEQEHGTVTHLDAFGEWIIACTSSRHVYVWKH 142


>SPBC106.11c |plg7||phospholipase A2 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 438

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 10/13 (76%), Positives = 12/13 (92%)
 Frame = -2

Query: 342 SIGSASCAFISGS 304
           S G+A+CAFISGS
Sbjct: 257 SFGAATCAFISGS 269


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,883,173
Number of Sequences: 5004
Number of extensions: 59750
Number of successful extensions: 110
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)