Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc9h19
         (535 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1827.01c |||DUF1253 family protein|Schizosaccharomyces pombe...   104   1e-23
SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2 |Schizosacch...    29   0.33 
SPBC18H10.16 |||amino acid permease, unknown 9|Schizosaccharomyc...    28   0.76 
SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex lar...    27   2.3  
SPAC1687.18c |ssl3||cohesin loading factor Ssl3|Schizosaccharomy...    26   3.1  
SPAC13G7.11 |||mitochondrial inner membrane protein|Schizosaccha...    26   4.1  
SPAC3A11.04 |||siepin homolog|Schizosaccharomyces pombe|chr 1|||...    25   7.1  
SPAC27F1.08 |pdt1||Nramp family manganese ion transporter|Schizo...    25   9.4  

>SPCC1827.01c |||DUF1253 family protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 652

 Score =  104 bits (249), Expect = 1e-23
 Identities = 42/102 (41%), Positives = 67/102 (65%)
 Frame = +2

Query: 11  VLPKQRDTLMSHTLIYVPSYFDYVRIRNYFKKEDISFVQICEYSKDAKIARARDMFFHTE 190
           +L + +    S  L+Y+PSYFD+VR+RNY  +E I++  I EYS  + + RAR++F+   
Sbjct: 499 ILVQLKKYSQSGILVYIPSYFDFVRVRNYMDEEGINYSAISEYSSVSDMTRARNLFYQGR 558

Query: 191 AHFLLYSERVHFFRRFRIKGIRHIIFYQPPTYPHFYSEMCNL 316
            + +LY+ER H FRRF  +G++ ++ Y PPT P FY E+  +
Sbjct: 559 TNIMLYTERAHHFRRFDFRGVKAVVMYGPPTNPQFYVELVRM 600


>SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1318

 Score = 29.5 bits (63), Expect = 0.33
 Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
 Frame = +2

Query: 179  FHTEAHFLLYSERVHFFRRFRIKGIRHIIFYQPPTYP-HFYSEMCNLM 319
            F++    LLYS   H     +IKGI  + FY+P   P H     C L+
Sbjct: 1166 FYSILKSLLYSMVQHDSEMKKIKGIALMNFYKPKKVPIHVVQSFCRLL 1213


>SPBC18H10.16 |||amino acid permease, unknown 9|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1050

 Score = 28.3 bits (60), Expect = 0.76
 Identities = 17/47 (36%), Positives = 22/47 (46%)
 Frame = -2

Query: 252 IPLILNLRKKWTLSEYSKKCASVWKNISLARAIFASLEYSQICTKLM 112
           + ++L LR  W + E       +   IS A  IF SL  S ICT  M
Sbjct: 92  LSILLYLRFPWIIGEAGVLKTLLMLFISYAVGIFTSLSISAICTNGM 138


>SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex large
           subunit Nuc1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1689

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 14/56 (25%), Positives = 26/56 (46%)
 Frame = +2

Query: 221 HFFRRFRIKGIRHIIFYQPPTYPHFYSEMCNLMQESNQNKYGGSECNMTVSVLYCR 388
           H   R+      HI+   P  +P F+S+M NL++ +    +      + V + +CR
Sbjct: 67  HLDERYCPGHFGHIVLPIPAYHPLFFSQMYNLLRSTCLYCHHFKLSKVKVHLFFCR 122


>SPAC1687.18c |ssl3||cohesin loading factor Ssl3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 559

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +2

Query: 5   KEVLPKQRDTLMSHTLIYVPSYFDY 79
           +E+LPK    L S T ++  SY D+
Sbjct: 239 REILPKIHSKLESETFVWPSSYIDF 263


>SPAC13G7.11 |||mitochondrial inner membrane
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 269

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 15/48 (31%), Positives = 25/48 (52%)
 Frame = -1

Query: 205 QQEVCFGVEEHISGSGYLRILRVFADLHKTNVFFLKIIPYAHVIEVAR 62
           Q +  + +E+HIS    L + R  ADL K   FF++ +   H ++  R
Sbjct: 151 QPKCIWKLEKHISKPKLLNLSRAQADL-KGEEFFVQAVVRLHTLQSLR 197


>SPAC3A11.04 |||siepin homolog|Schizosaccharomyces pombe|chr
          1|||Manual
          Length = 236

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +2

Query: 29 DTLMSHTLIYVPSYFDYVRIRNY 97
          DT++ H++I  P YF+Y    N+
Sbjct: 20 DTVIPHSVIQYPVYFNYTTGLNF 42


>SPAC27F1.08 |pdt1||Nramp family manganese ion
           transporter|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 521

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 13/46 (28%), Positives = 20/46 (43%)
 Frame = +2

Query: 2   IKEVLPKQRDTLMSHTLIYVPSYFDYVRIRNYFKKEDISFVQICEY 139
           I E+ P+Q DT  S  L+    Y        Y+KK      + C++
Sbjct: 29  INELNPEQNDTRRSTDLLLEDKYGIQTGFSKYWKKCTYGIREYCKF 74


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,844,254
Number of Sequences: 5004
Number of extensions: 34925
Number of successful extensions: 110
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 220420454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)