Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc9h19
(535 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_03_0356 + 12894195-12894237,12894347-12894484,12894868-128950... 57 1e-08
05_01_0226 + 1682671-1682717,1682979-1683119,1683218-1683343,168... 30 1.3
09_04_0075 - 14340458-14340551,14340643-14340814,14340895-143410... 29 2.4
05_03_0293 - 11813846-11813965,11814073-11814408,11814516-118146... 29 3.1
04_01_0038 + 446314-446787,446829-447350 28 4.1
03_01_0658 + 4818401-4818540,4818605-4819201,4819694-4819949,482... 28 4.1
10_08_1059 + 22618999-22619206,22620386-22620416,22620440-226209... 28 5.4
03_05_0890 - 28547462-28547545,28548451-28548528,28548641-285488... 27 9.5
>05_03_0356 +
12894195-12894237,12894347-12894484,12894868-12895018,
12895399-12895526,12895704-12895840,12896742-12896847,
12898659-12898762,12899159-12899281,12899620-12899700,
12900159-12900304,12902171-12902243,12902970-12903060,
12904978-12905018,12906079-12906153,12906402-12906569,
12907638-12907676,12907759-12907847,12908014-12908078,
12908794-12908840,12908924-12908983,12909168-12909239,
12910143-12910172,12910526-12910617,12910719-12910802,
12911941-12912046,12912171-12912233,12912776-12912870,
12913000-12913180
Length = 875
Score = 56.8 bits (131), Expect = 1e-08
Identities = 25/54 (46%), Positives = 33/54 (61%)
Frame = +2
Query: 155 IARARDMFFHTEAHFLLYSERVHFFRRFRIKGIRHIIFYQPPTYPHFYSEMCNL 316
I+RAR FF + LLYSER HF+ R++I+G H+I Y P FY E+ L
Sbjct: 735 ISRARLWFFEGKKKILLYSERSHFYHRYKIRGAHHLIIYSLPGRKEFYPELAEL 788
>05_01_0226 +
1682671-1682717,1682979-1683119,1683218-1683343,
1683545-1683908
Length = 225
Score = 29.9 bits (64), Expect = 1.3
Identities = 13/30 (43%), Positives = 20/30 (66%)
Frame = -1
Query: 154 LRILRVFADLHKTNVFFLKIIPYAHVIEVA 65
L I+ + LH+ +FFL ++PYA V+ VA
Sbjct: 16 LVIVPLLLSLHQLYLFFLHLLPYACVVSVA 45
>09_04_0075 -
14340458-14340551,14340643-14340814,14340895-14341066,
14341617-14341811,14341886-14342053,14342150-14342335,
14342797-14342881,14342896-14343206,14344222-14344569
Length = 576
Score = 29.1 bits (62), Expect = 2.4
Identities = 12/44 (27%), Positives = 21/44 (47%)
Frame = -1
Query: 265 YYMPDPFDPESPEEVDSL*IQQEVCFGVEEHISGSGYLRILRVF 134
Y +PD ++ P D + CF + H++ S LR ++ F
Sbjct: 175 YCLPDGYEINDPSLEDIRHVLNPRCFSIVAHVNSSNELRAMQFF 218
>05_03_0293 -
11813846-11813965,11814073-11814408,11814516-11814617,
11814729-11814912,11815012-11815196,11815949-11816095,
11816310-11816426
Length = 396
Score = 28.7 bits (61), Expect = 3.1
Identities = 11/34 (32%), Positives = 17/34 (50%)
Frame = -3
Query: 362 CYTRCPRTCSGCSPASGYTSRSKSADTSAADKIL 261
CY +CP+ +G + + Y R ADK+L
Sbjct: 319 CYIKCPKMATGSNDCAFYVMRFMEKYNGDADKLL 352
>04_01_0038 + 446314-446787,446829-447350
Length = 331
Score = 28.3 bits (60), Expect = 4.1
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +1
Query: 205 VFRESPLLPEIQDQRDPAYNILSAAD 282
V PL+PE + + P+Y +L AAD
Sbjct: 16 VLLADPLIPEFEQELAPSYRLLPAAD 41
>03_01_0658 +
4818401-4818540,4818605-4819201,4819694-4819949,
4820038-4820723,4821009-4821147,4821378-4821514,
4821805-4822077,4822175-4822382,4822660-4822731,
4823230-4823460,4824269-4824532,4825127-4825268,
4825355-4825467
Length = 1085
Score = 28.3 bits (60), Expect = 4.1
Identities = 13/43 (30%), Positives = 26/43 (60%)
Frame = -1
Query: 151 RILRVFADLHKTNVFFLKIIPYAHVIEVARHVDERVTHEGVTL 23
++ R+FA LH + + F+ P+ +E+ V ++ +HE +TL
Sbjct: 171 QLARLFAQLHSSKMAFIDSAPFIKTLELDNGV-QQDSHEFLTL 212
>10_08_1059 +
22618999-22619206,22620386-22620416,22620440-22620974,
22621065-22621319
Length = 342
Score = 27.9 bits (59), Expect = 5.4
Identities = 12/21 (57%), Positives = 15/21 (71%), Gaps = 1/21 (4%)
Frame = -3
Query: 374 PT-PSCYTRCPRTCSGCSPAS 315
PT P+ Y+ P +CSGC PAS
Sbjct: 21 PTGPTHYSHPPGSCSGCRPAS 41
>03_05_0890 -
28547462-28547545,28548451-28548528,28548641-28548814,
28548902-28548958,28549065-28549116,28549907-28549995,
28550259-28550344,28550427-28550637,28551790-28551882,
28551958-28552098,28552175-28552267,28553879-28554113,
28554263-28554435,28555234-28556571,28556668-28556853,
28557625-28557713,28557756-28557905,28557951-28558596
Length = 1324
Score = 27.1 bits (57), Expect = 9.5
Identities = 12/39 (30%), Positives = 23/39 (58%)
Frame = -3
Query: 383 STAPTPSCYTRCPRTCSGCSPASGYTSRSKSADTSAADK 267
S + +P+ + PRT + PA+G + + S+ +S +DK
Sbjct: 15 SESSSPTDGSNSPRTPTSAPPAAGSPAAASSSSSSRSDK 53
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,843,189
Number of Sequences: 37544
Number of extensions: 248102
Number of successful extensions: 764
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 753
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 764
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1190246000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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